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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053140 through 18771 annotations produced 1 hits



/// (CG30384 /// CG33140):

Annotation Number : CG33140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053140
Gbrowse : chr2R:3065894-3068165 (+) // 100.0 //
Probeset : 1637527_at
Accessions : protein= NP_788279;, nucleotide= NM_176099;
FlyMine data for FBgn0053140.
VDRC has 1 RNAi stocks for FBgn0053140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head3 ± 00 of 4 0.20Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.40Down
Salivary gland8 ± 20 of 4 0.46Down
Crop6 ± 10 of 4 0.30Down
Midgut5 ± 10 of 4 0.30Down
Tubule4 ± 10 of 4 0.20Down
Hindgut4 ± 20 of 4 0.20Down
Heart2 ± 10 of 4 0.12Down
Fat body3 ± 30 of 4 0.17Down
Ovary2 ± 00 of 4 0.10Down
Testis319 ± 44 of 416.30Up
Male accessory glands6 ± 30 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.13Down
Mated spermatheca3 ± 10 of 4 0.18Down
Adult carcass6 ± 30 of 4 0.30Down
Larval CNS4 ± 11 of 4 0.24Down
Larval Salivary gland8 ± 00 of 4 0.42Down
Larval midgut4 ± 20 of 4 0.24Down
Larval tubule8 ± 10 of 4 0.40Down
Larval hindgut5 ± 10 of 4 0.25Down
Larval fat body31 ± 122 of 4 1.60None
Larval trachea1 ± 00 of 4 0.07Down
Larval carcass2 ± 00 of 4 0.12Down
S2 cells (growing)3 ± 10 of 4 0.20Down
Whole fly19 ± 14 of 4

Looking for FBgn0053140. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime