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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053143 through 18771 annotations produced 1 hits


Annotation Number : CG33143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053143
Gbrowse : chr2R:18501834-18521576 (+) // 100.0 //
Probeset : 1640974_a_at
Accessions : protein= NP_788426; /// NP_788427;, nucleotide= NM_176246; /// NM_176247;
FlyMine data for FBgn0053143.
BDGP gene expression has embryonic in situ data for CG33143: 8 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0053143 available for purchase.
VDRC has 1 RNAi stocks for FBgn0053143 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain383 134 of 417.10Up
Head110 74 of 4 4.90Up
Eye158 134 of 4 7.07Up
Thoracicoabdominal ganglion327 224 of 414.60Up
Salivary gland25 43 of 4 1.13None
Crop231 74 of 410.30Up
Midgut56 44 of 4 2.50Up
Tubule9 12 of 4 0.40Down
Hindgut170 64 of 4 7.60Up
Heart12 24 of 4 0.55Down
Fat body14 24 of 4 0.64Down
Ovary5 13 of 4 0.20Down
Testis26 14 of 4 1.20None
Male accessory glands31 34 of 4 1.40None
Virgin spermatheca11 13 of 4 0.51Down
Mated spermatheca7 23 of 4 0.34Down
Adult carcass24 23 of 4 1.10None
Larval CNS102 104 of 4 4.56Up
Larval Salivary gland7 13 of 4 0.34Down
Larval midgut44 94 of 4 1.99None
Larval tubule12 24 of 4 0.50Down
Larval hindgut122 84 of 4 5.44Up
Larval fat body4 10 of 4 0.20Down
Larval trachea6 23 of 4 0.27Down
Larval carcass63 254 of 4 2.82None
S2 cells (growing)3 00 of 4 0.14Down
Whole fly22 04 of 4

Looking for FBgn0053143. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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