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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053147 through 18771 annotations produced 1 hits

CG33147 (Hs3st-A):

Annotation Number : CG33147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053147
Gbrowse : chr2R:14605633-14642026 (+) // 99.91 //
Probeset : 1629228_at
Accessions : protein= NP_788409;, nucleotide= NM_176229;
Interpro : 0008146 // sulfotransferase activity // inferred from electronic annotation /// 0008467 // [heparan sulfate]-glucosamine
FlyMine data for FBgn0053147.
BDGP gene expression has embryonic in situ data for CG33147: 21 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0053147 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053147 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain604 424 of 421.50Up
Head101 74 of 4 3.60Up
Eye57 114 of 4 2.04None
Thoracicoabdominal ganglion425 244 of 415.10Up
Salivary gland10 10 of 4 0.39Down
Crop63 114 of 4 2.30None
Midgut21 14 of 4 0.80None
Tubule5 00 of 4 0.20Down
Hindgut6 12 of 4 0.20Down
Heart3 10 of 4 0.11Down
Fat body16 42 of 4 0.58None
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands6 00 of 4 0.20Down
Virgin spermatheca11 13 of 4 0.40Down
Mated spermatheca18 14 of 4 0.66None
Adult carcass23 23 of 4 0.80None
Larval CNS110 204 of 4 3.93Up
Larval Salivary gland2 10 of 4 0.09Down
Larval midgut31 44 of 4 1.11None
Larval tubule4 00 of 4 0.20Down
Larval hindgut31 34 of 4 1.10None
Larval fat body4 10 of 4 0.20Down
Larval trachea6 31 of 4 0.24Down
Larval carcass3 00 of 4 0.14Down
S2 cells (growing)2 10 of 4 0.10Down
Whole fly28 44 of 4

Looking for FBgn0053147. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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