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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053159 through 18771 annotations produced 1 hits



(CG33159):

Annotation Number : CG33159
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053159
Gbrowse : chr3L:3203674-3204448 (-) // 100.0 //
Probeset : 1630655_at
Accessions : protein= NP_788455;, nucleotide= NM_176277;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0053159.
Homophila reports that CG33159 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
TRiP has 1 RNAi stocks for FBgn0053159 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.70None
Head30 ± 24 of 4 7.50Up
Eye5 ± 11 of 4 1.43None
Thoracicoabdominal ganglion2 ± 10 of 4 0.60None
Salivary gland7 ± 20 of 4 1.73None
Crop1 ± 00 of 4 0.30None
Midgut4 ± 10 of 4 1.00None
Tubule3 ± 00 of 4 0.70None
Hindgut2 ± 10 of 4 0.60None
Heart0 ± 00 of 4 0.23None
Fat body4 ± 20 of 4 1.19None
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.40None
Male accessory glands2 ± 10 of 4 0.50None
Virgin spermatheca10 ± 14 of 4 2.66Up
Mated spermatheca13 ± 23 of 4 3.22Up
Adult carcass4 ± 20 of 4 1.00None
Larval CNS2 ± 20 of 4 0.67None
Larval Salivary gland4 ± 10 of 4 1.19None
Larval midgut8 ± 30 of 4 2.10None
Larval tubule2 ± 10 of 4 0.70None
Larval hindgut2 ± 00 of 4 0.56None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea3 ± 20 of 4 0.85None
Larval carcass6 ± 00 of 4 1.69None
S2 cells (growing)2 ± 00 of 4 0.49None
Whole fly4 ± 10 of 4

Looking for FBgn0053159. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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