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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053160 through 18771 annotations produced 1 hits



(CG33160):

Annotation Number : CG33160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053160
Gbrowse : chr3L:3205586-3206363 (-) // 100.0 //
Probeset : 1638303_at
Accessions : protein= NP_788456;, nucleotide= NM_176278;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0053160.
Homophila reports that CG33160 is a close match (4e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 2 RNAi stocks for FBgn0053160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10None
Head2 10 of 4 0.40None
Eye1 10 of 4 0.23None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland2 10 of 4 0.30None
Crop3 00 of 4 0.40None
Midgut2 00 of 4 0.40None
Tubule4 00 of 4 0.60Down
Hindgut1 00 of 4 0.20None
Heart2 10 of 4 0.28None
Fat body7 40 of 4 1.02None
Ovary1 00 of 4 0.20None
Testis5 10 of 4 0.70None
Male accessory glands3 00 of 4 0.50None
Virgin spermatheca9 20 of 4 1.24None
Mated spermatheca5 00 of 4 0.71None
Adult carcass3 20 of 4 0.50None
Larval CNS0 00 of 4 0.11None
Larval Salivary gland9 20 of 4 1.25None
Larval midgut1 00 of 4 0.25None
Larval tubule5 10 of 4 0.70None
Larval hindgut4 20 of 4 0.61None
Larval fat body7 30 of 4 1.00None
Larval trachea2 30 of 4 0.35None
Larval carcass5 20 of 4 0.78None
S2 cells (growing)3 10 of 4 0.53None
Whole fly7 31 of 4

Looking for FBgn0053160. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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