FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053169 through 18771 annotations produced 3 hits

(CG33169):

Annotation Number : CG33169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053169
Gbrowse : chr3L:22856963-22857596 (+) // 100.0 //
Probeset : 1632606_a_at
Accessions : protein= NP_001137999; /// NP_788568;, nucleotide= NM_001144527; /// NM_176390;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0053169.
VDRC has 4 RNAi stocks for FBgn0053169 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 1	4 of 4	0.80	Down
Head	34 ± 1	4 of 4	1.00	None
Eye	33 ± 0	4 of 4	1.02	None
Thoracicoabdominal ganglion	22 ± 1	4 of 4	0.70	Down
Salivary gland	259 ± 17	4 of 4	7.84	Up
Crop	43 ± 2	4 of 4	1.30	Up
Midgut	42 ± 3	4 of 4	1.30	None
Tubule	24 ± 1	3 of 4	0.70	Down
Hindgut	53 ± 1	4 of 4	1.60	Up
Heart	15 ± 1	4 of 4	0.48	Down
Fat body	26 ± 4	4 of 4	0.79	None
Ovary	34 ± 1	4 of 4	1.00	None
Testis	10 ± 0	3 of 4	0.30	Down
Male accessory glands	278 ± 20	4 of 4	8.40	Up
Virgin spermatheca	39 ± 1	4 of 4	1.19	Up
Mated spermatheca	45 ± 2	4 of 4	1.36	Up
Adult carcass	34 ± 3	4 of 4	1.00	None
Larval CNS	18 ± 1	4 of 4	0.56	Down
Larval Salivary gland	250 ± 11	4 of 4	7.56	Up
Larval midgut	42 ± 5	4 of 4	1.27	None
Larval tubule	17 ± 1	1 of 4	0.50	Down
Larval hindgut	50 ± 1	4 of 4	1.53	Up
Larval fat body	9 ± 1	0 of 4	0.30	Down
Larval trachea	45 ± 6	4 of 4	1.38	Up
Larval carcass	48 ± 5	4 of 4	1.48	None
S2 cells (growing)	27 ± 1	4 of 4	0.84	Down
Whole fly	33 ± 0	4 of 4

(CG33169):

Annotation Number : CG33169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053169
Gbrowse : chr3L:22856963-22857596 (+) // 100.0 //
Probeset : 1641489_at
Accessions : protein= NP_001137999; /// NP_788568;, nucleotide= NM_001144527; /// NM_176390;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0053169.
VDRC has 4 RNAi stocks for FBgn0053169 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	29 ± 1	4 of 4	0.40	Down
Head	57 ± 3	4 of 4	0.90	None
Eye	53 ± 1	4 of 4	0.81	Down
Thoracicoabdominal ganglion	25 ± 3	4 of 4	0.40	Down
Salivary gland	436 ± 24	4 of 4	6.56	Up
Crop	57 ± 3	4 of 4	0.90	None
Midgut	78 ± 9	4 of 4	1.20	None
Tubule	94 ± 2	4 of 4	1.40	Up
Hindgut	92 ± 2	4 of 4	1.40	Up
Heart	20 ± 3	4 of 4	0.30	Down
Fat body	24 ± 7	4 of 4	0.37	Down
Ovary	63 ± 2	4 of 4	1.00	None
Testis	21 ± 1	4 of 4	0.30	Down
Male accessory glands	765 ± 105	4 of 4	11.50	Up
Virgin spermatheca	213 ± 4	4 of 4	3.21	Up
Mated spermatheca	178 ± 10	4 of 4	2.68	Up
Adult carcass	60 ± 8	4 of 4	0.90	None
Larval CNS	16 ± 3	4 of 4	0.25	Down
Larval Salivary gland	483 ± 47	4 of 4	7.27	Up
Larval midgut	66 ± 8	4 of 4	1.00	None
Larval tubule	28 ± 2	4 of 4	0.40	Down
Larval hindgut	75 ± 7	4 of 4	1.14	None
Larval fat body	14 ± 1	0 of 4	0.20	Down
Larval trachea	68 ± 11	4 of 4	1.03	None
Larval carcass	79 ± 9	4 of 4	1.20	None
S2 cells (growing)	30 ± 3	4 of 4	0.46	Down
Whole fly	66 ± 1	4 of 4

(CG33170):

Annotation Number : CG33169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053170
Gbrowse : chr3L:22856965-22858309 (+) // 99.6 //
Probeset : 1631473_at
Accessions : protein= NP_001138000; /// NP_788569;, nucleotide= NM_001144528; /// NM_176391;
FlyMine data for FBgn0053170.
VDRC has 4 RNAi stocks for FBgn0053170 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	1 of 4	0.80	None
Head	25 ± 1	3 of 4	1.30	None
Eye	16 ± 1	2 of 4	0.83	None
Thoracicoabdominal ganglion	20 ± 1	2 of 4	1.00	None
Salivary gland	36 ± 5	0 of 4	1.78	None
Crop	33 ± 3	3 of 4	1.70	Up
Midgut	30 ± 5	0 of 4	1.50	None
Tubule	13 ± 0	0 of 4	0.70	Down
Hindgut	41 ± 2	4 of 4	2.10	Up
Heart	25 ± 0	4 of 4	1.26	None
Fat body	30 ± 4	0 of 4	1.48	Up
Ovary	11 ± 1	1 of 4	0.50	Down
Testis	50 ± 1	4 of 4	2.50	Up
Male accessory glands	21 ± 5	2 of 4	1.00	None
Virgin spermatheca	16 ± 1	0 of 4	0.84	None
Mated spermatheca	17 ± 1	0 of 4	0.88	None
Adult carcass	54 ± 4	3 of 4	2.70	Up
Larval CNS	25 ± 2	2 of 4	1.24	None
Larval Salivary gland	20 ± 2	0 of 4	1.02	None
Larval midgut	37 ± 3	1 of 4	1.84	Up
Larval tubule	29 ± 3	0 of 4	1.50	None
Larval hindgut	41 ± 3	4 of 4	2.03	Up
Larval fat body	22 ± 2	0 of 4	1.10	None
Larval trachea	19 ± 4	0 of 4	0.99	None
Larval carcass	55 ± 7	4 of 4	2.77	Up
S2 cells (growing)	7 ± 2	0 of 4	0.39	Down
Whole fly	20 ± 2	0 of 4

Looking for FBgn0053169. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720