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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053170 through 18771 annotations produced 2 hits



(CG33170):

Annotation Number : CG33169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053170
Gbrowse : chr3L:22856965-22858309 (+) // 99.6 //
Probeset : 1631473_at
Accessions : protein= NP_001138000; /// NP_788569;, nucleotide= NM_001144528; /// NM_176391;
FlyMine data for FBgn0053170.
VDRC has 4 RNAi stocks for FBgn0053170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 11 of 4 0.80None
Head25 ± 13 of 4 1.30None
Eye16 ± 12 of 4 0.83None
Thoracicoabdominal ganglion20 ± 12 of 4 1.00None
Salivary gland36 ± 50 of 4 1.78None
Crop33 ± 33 of 4 1.70Up
Midgut30 ± 50 of 4 1.50None
Tubule13 ± 00 of 4 0.70Down
Hindgut41 ± 24 of 4 2.10Up
Heart25 ± 04 of 4 1.26None
Fat body30 ± 40 of 4 1.48Up
Ovary11 ± 11 of 4 0.50Down
Testis50 ± 14 of 4 2.50Up
Male accessory glands21 ± 52 of 4 1.00None
Virgin spermatheca16 ± 10 of 4 0.84None
Mated spermatheca17 ± 10 of 4 0.88None
Adult carcass54 ± 43 of 4 2.70Up
Larval CNS25 ± 22 of 4 1.24None
Larval Salivary gland20 ± 20 of 4 1.02None
Larval midgut37 ± 31 of 4 1.84Up
Larval tubule29 ± 30 of 4 1.50None
Larval hindgut41 ± 34 of 4 2.03Up
Larval fat body22 ± 20 of 4 1.10None
Larval trachea19 ± 40 of 4 0.99None
Larval carcass55 ± 74 of 4 2.77Up
S2 cells (growing)7 ± 20 of 4 0.39Down
Whole fly20 ± 20 of 4



(CG33170):

Annotation Number : CG33170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053170
Gbrowse : chr3L:22858585-22860479 (+) // 100.0 //
Probeset : 1630421_at
Accessions : protein= NP_001138000; /// NP_788569;, nucleotide= NM_001144528; /// NM_176391;
FlyMine data for FBgn0053170.
VDRC has 4 RNAi stocks for FBgn0053170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain337 ± 94 of 4 1.30Up
Head287 ± 214 of 4 1.10None
Eye235 ± 74 of 4 0.88None
Thoracicoabdominal ganglion385 ± 174 of 4 1.40Up
Salivary gland288 ± 144 of 4 1.07None
Crop349 ± 104 of 4 1.30Up
Midgut211 ± 124 of 4 0.80Down
Tubule219 ± 74 of 4 0.80Down
Hindgut315 ± 94 of 4 1.20Up
Heart197 ± 124 of 4 0.73Down
Fat body338 ± 154 of 4 1.26Up
Ovary224 ± 44 of 4 0.80Down
Testis821 ± 154 of 4 3.10Up
Male accessory glands217 ± 74 of 4 0.80Down
Virgin spermatheca247 ± 84 of 4 0.92None
Mated spermatheca232 ± 144 of 4 0.86None
Adult carcass321 ± 114 of 4 1.20Up
Larval CNS302 ± 244 of 4 1.13None
Larval Salivary gland187 ± 104 of 4 0.70Down
Larval midgut245 ± 94 of 4 0.92None
Larval tubule161 ± 84 of 4 0.60Down
Larval hindgut252 ± 84 of 4 0.94None
Larval fat body223 ± 174 of 4 0.80None
Larval trachea148 ± 94 of 4 0.55Down
Larval carcass226 ± 144 of 4 0.84None
S2 cells (growing)242 ± 144 of 4 0.90None
Whole fly268 ± 124 of 4

Looking for FBgn0053170. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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