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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053172 through 18771 annotations produced 1 hits



(CG33172):

Annotation Number : CG33172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053172
Gbrowse : chrX:15663858-15666857 (+) // 100.0 //
Probeset : 1625333_at
Accessions : protein= NP_788911;, nucleotide= NM_176738;
FlyMine data for FBgn0053172.
VDRC has 3 RNAi stocks for FBgn0053172 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 0.20Down
Head15 ± 14 of 4 0.30Down
Eye8 ± 13 of 4 0.18Down
Thoracicoabdominal ganglion14 ± 24 of 4 0.30Down
Salivary gland24 ± 52 of 4 0.51Down
Crop19 ± 24 of 4 0.40Down
Midgut23 ± 14 of 4 0.50Down
Tubule18 ± 33 of 4 0.40Down
Hindgut13 ± 14 of 4 0.30Down
Heart14 ± 12 of 4 0.30Down
Fat body19 ± 14 of 4 0.41Down
Ovary162 ± 34 of 4 3.40Up
Testis7 ± 13 of 4 0.20Down
Male accessory glands39 ± 64 of 4 0.80None
Virgin spermatheca14 ± 14 of 4 0.31Down
Mated spermatheca21 ± 14 of 4 0.45Down
Adult carcass15 ± 51 of 4 0.30Down
Larval CNS39 ± 44 of 4 0.83None
Larval Salivary gland26 ± 14 of 4 0.57Down
Larval midgut14 ± 14 of 4 0.31Down
Larval tubule13 ± 14 of 4 0.30Down
Larval hindgut18 ± 24 of 4 0.40Down
Larval fat body9 ± 12 of 4 0.20Down
Larval trachea32 ± 64 of 4 0.69Down
Larval carcass24 ± 34 of 4 0.52Down
S2 cells (growing)40 ± 24 of 4 0.85None
Whole fly47 ± 34 of 4

Looking for FBgn0053172. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime