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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053177 through 18771 annotations produced 1 hits



(CG33177):

Annotation Number : CG33177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053177
Gbrowse : chrX:14975581-14976226 (+) // 100.0 //
Probeset : 1625288_at
Accessions : protein= NP_788903;, nucleotide= NM_176730;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0053177.
VDRC has 1 RNAi stocks for FBgn0053177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.80None
Head34 ± 54 of 4 4.60Up
Eye7 ± 02 of 4 0.98None
Thoracicoabdominal ganglion7 ± 12 of 4 0.90None
Salivary gland9 ± 20 of 4 1.32None
Crop5 ± 10 of 4 0.70None
Midgut12 ± 00 of 4 1.70None
Tubule9 ± 11 of 4 1.20None
Hindgut10 ± 11 of 4 1.40None
Heart4 ± 10 of 4 0.63None
Fat body11 ± 21 of 4 1.51None
Ovary4 ± 00 of 4 0.60None
Testis1 ± 00 of 4 0.20None
Male accessory glands6 ± 20 of 4 0.90None
Virgin spermatheca6 ± 00 of 4 0.93None
Mated spermatheca9 ± 10 of 4 1.21None
Adult carcass9 ± 20 of 4 1.30None
Larval CNS10 ± 24 of 4 1.37None
Larval Salivary gland7 ± 10 of 4 0.96None
Larval midgut14 ± 11 of 4 1.97Up
Larval tubule10 ± 10 of 4 1.50None
Larval hindgut7 ± 11 of 4 1.06None
Larval fat body7 ± 21 of 4 1.00None
Larval trachea5 ± 20 of 4 0.72None
Larval carcass9 ± 00 of 4 1.22None
S2 cells (growing)32 ± 24 of 4 4.35Up
Whole fly7 ± 21 of 4

Looking for FBgn0053177. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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