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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053180 through 18771 annotations produced 1 hits



Ranbp16 (Ranbp16):

Annotation Number : CG33180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053180
Gbrowse : chrX:15822739-15827684 (-) // 100.0 //
Probeset : 1623857_at
Accessions : protein= NP_788913;, nucleotide= NM_176740;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0005049 // nuclear export signal receptor activity // non-traceable author statement /// 0005049 // nuclear export signa
FlyMine data for FBgn0053180.
VDRC has 4 RNAi stocks for FBgn0053180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain340 ± 74 of 4 1.80Up
Head135 ± 44 of 4 0.70Down
Eye124 ± 54 of 4 0.65Down
Thoracicoabdominal ganglion279 ± 74 of 4 1.50Up
Salivary gland81 ± 54 of 4 0.42Down
Crop137 ± 64 of 4 0.70Down
Midgut109 ± 14 of 4 0.60Down
Tubule113 ± 74 of 4 0.60Down
Hindgut138 ± 34 of 4 0.70Down
Heart127 ± 44 of 4 0.66Down
Fat body123 ± 94 of 4 0.64Down
Ovary341 ± 124 of 4 1.80Up
Testis319 ± 84 of 4 1.70Up
Male accessory glands100 ± 44 of 4 0.50Down
Virgin spermatheca191 ± 84 of 4 0.99None
Mated spermatheca245 ± 124 of 4 1.28Up
Adult carcass119 ± 44 of 4 0.60Down
Larval CNS275 ± 104 of 4 1.43Up
Larval Salivary gland114 ± 34 of 4 0.59Down
Larval midgut75 ± 34 of 4 0.39Down
Larval tubule151 ± 54 of 4 0.80None
Larval hindgut124 ± 44 of 4 0.64Down
Larval fat body166 ± 264 of 4 0.90None
Larval trachea109 ± 24 of 4 0.57Down
Larval carcass108 ± 44 of 4 0.57Down
S2 cells (growing)178 ± 04 of 4 0.93None
Whole fly192 ± 164 of 4

Looking for FBgn0053180. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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