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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053181 through 18771 annotations produced 2 hits



(CG33181):

Annotation Number : CG32714
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053181
Gbrowse : chrX:8383381-8404132 (+) // 100.0 //
Probeset : 1634670_at
Accessions : protein= NP_001096908; /// NP_001096910; /// NP_001096911; /// NP_001096912; /// NP_788885;, nucleotide= NM_001103438; /// NM_001103440; /// NM_001103441; /// NM_001103442; /// NM_176712;
Interpro : 0008324 // cation transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0053181.
TRiP has 3 RNAi stocks for FBgn0053181 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain658 204 of 4 3.10Up
Head223 184 of 4 1.10None
Eye762 384 of 4 3.64Up
Thoracicoabdominal ganglion878 204 of 4 4.20Up
Salivary gland93 114 of 4 0.45Down
Crop246 284 of 4 1.20None
Midgut1060 254 of 4 5.10Up
Tubule416 344 of 4 2.00Up
Hindgut56 44 of 4 0.30Down
Heart6 13 of 4 0.03Down
Fat body34 204 of 4 0.16Down
Ovary308 34 of 4 1.50Up
Testis10 14 of 4 0.10Down
Male accessory glands626 224 of 4 3.00Up
Virgin spermatheca76 14 of 4 0.36Down
Mated spermatheca89 204 of 4 0.43Down
Adult carcass44 44 of 4 0.20Down
Larval CNS238 154 of 4 1.14Up
Larval Salivary gland51 104 of 4 0.25Down
Larval midgut926 974 of 4 4.42Up
Larval tubule472 374 of 4 2.30Up
Larval hindgut221 214 of 4 1.05None
Larval fat body9 22 of 4 0.00Down
Larval trachea655 564 of 4 3.13Up
Larval carcass203 164 of 4 0.97None
S2 cells (growing)5 04 of 4 0.03Down
Whole fly209 54 of 4



(CG33181):

Annotation Number : CG33181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053181
Gbrowse : chrX:8404257-8409959 (+) // 100.0 //
Probeset : 1628563_at
Accessions : protein= NP_001096908; /// NP_001096910; /// NP_001096911; /// NP_001096912; /// NP_788885;, nucleotide= NM_001103438; /// NM_001103440; /// NM_001103441; /// NM_001103442; /// NM_176712;
Interpro : 0008324 // cation transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0053181.
TRiP has 3 RNAi stocks for FBgn0053181 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 54 of 4 2.20Up
Head83 94 of 4 0.80None
Eye200 74 of 4 1.84Up
Thoracicoabdominal ganglion271 34 of 4 2.50Up
Salivary gland114 104 of 4 1.05None
Crop83 64 of 4 0.80None
Midgut378 144 of 4 3.50Up
Tubule153 114 of 4 1.40Up
Hindgut24 04 of 4 0.20Down
Heart7 20 of 4 0.07Down
Fat body9 50 of 4 0.09Down
Ovary145 24 of 4 1.30Up
Testis67 44 of 4 0.60Down
Male accessory glands202 54 of 4 1.90Up
Virgin spermatheca6 20 of 4 0.06Down
Mated spermatheca7 30 of 4 0.07Down
Adult carcass37 63 of 4 0.30Down
Larval CNS69 54 of 4 0.64Down
Larval Salivary gland33 64 of 4 0.30Down
Larval midgut244 74 of 4 2.24Up
Larval tubule129 104 of 4 1.20None
Larval hindgut73 54 of 4 0.67Down
Larval fat body13 31 of 4 0.10Down
Larval trachea157 184 of 4 1.44Up
Larval carcass55 64 of 4 0.51Down
S2 cells (growing)10 20 of 4 0.09Down
Whole fly109 114 of 4

Looking for FBgn0053181. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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