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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053189 through 18771 annotations produced 1 hits



(CG33189):

Annotation Number : CG33189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053189
Gbrowse : chr3R:4605834-4606518 (-) // 100.0 //
Probeset : 1632607_at
Accessions : protein= NP_788599;, nucleotide= NM_176422;
FlyMine data for FBgn0053189.
VDRC has 2 RNAi stocks for FBgn0053189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland6 ± 10 of 4 0.06Down
Crop3 ± 10 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body2 ± 10 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis1111 ± 464 of 410.90Up
Male accessory glands11 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut6 ± 20 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body90 ± 524 of 4 0.90None
Larval trachea9 ± 62 of 4 0.09Down
Larval carcass5 ± 21 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly102 ± 34 of 4

Looking for FBgn0053189. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime