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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053192 through 18771 annotations produced 1 hits



Metallothionein D (MtnD):

Annotation Number : CG33192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053192
Gbrowse : chr3R:16360726-16361007 (+) // 100.0 //
Probeset : 1631962_at
Accessions : protein= NP_788695;, nucleotide= NM_176518;
Interpro : 0046872 // metal ion binding // inferred from electronic annotation
FlyMine data for FBgn0053192.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 20 of 4 0.00Down
Head41 ± 64 of 4 0.10Down
Eye9 ± 41 of 4 0.03Down
Thoracicoabdominal ganglion10 ± 20 of 4 0.00Down
Salivary gland29 ± 50 of 4 0.08Down
Crop7 ± 20 of 4 0.00Down
Midgut3204 ± 1404 of 4 8.50Up
Tubule113 ± 244 of 4 0.30Down
Hindgut434 ± 324 of 4 1.20None
Heart2102 ± 4804 of 4 5.60Up
Fat body102 ± 564 of 4 0.27Down
Ovary2 ± 00 of 4 0.00Down
Testis12 ± 12 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca69 ± 284 of 4 0.19Down
Mated spermatheca36 ± 64 of 4 0.10Down
Adult carcass115 ± 124 of 4 0.30Down
Larval CNS3 ± 21 of 4 0.01Down
Larval Salivary gland15 ± 51 of 4 0.04Down
Larval midgut3555 ± 4564 of 4 9.48Up
Larval tubule1544 ± 2844 of 4 4.10Up
Larval hindgut484 ± 294 of 4 1.29None
Larval fat body274 ± 994 of 4 0.70None
Larval trachea17 ± 73 of 4 0.05Down
Larval carcass25 ± 24 of 4 0.07Down
S2 cells (growing)8 ± 10 of 4 0.02Down
Whole fly375 ± 684 of 4

Looking for FBgn0053192. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime