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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053198 through 18771 annotations produced 1 hits



presenilin enhancer (pen-2):

Annotation Number : CG33198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053198
Gbrowse : chr2R:14165030-14165658 (+) // 100.0 //
Probeset : 1637469_at
Accessions : protein= NP_788401;, nucleotide= NM_176221;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
Interpro : 0004175 // endopeptidase activity // inferred from direct assay
FlyMine data for FBgn0053198.
BioGrid reports that CG33198 interacts with CG7109 .
TRiP has 1 RNAi stocks for FBgn0053198 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 34 of 4 0.80Down
Head116 54 of 4 0.80Down
Eye147 64 of 4 0.96None
Thoracicoabdominal ganglion152 74 of 4 1.00None
Salivary gland124 14 of 4 0.81Down
Crop114 34 of 4 0.70Down
Midgut145 14 of 4 0.90None
Tubule192 34 of 4 1.20Up
Hindgut101 34 of 4 0.70Down
Heart148 84 of 4 0.97None
Fat body103 64 of 4 0.67Down
Ovary299 124 of 4 1.90Up
Testis176 94 of 4 1.10None
Male accessory glands165 84 of 4 1.10None
Virgin spermatheca128 104 of 4 0.83None
Mated spermatheca146 14 of 4 0.95None
Adult carcass88 54 of 4 0.60Down
Larval CNS231 84 of 4 1.50Up
Larval Salivary gland152 44 of 4 0.99None
Larval midgut149 104 of 4 0.97None
Larval tubule337 164 of 4 2.20Up
Larval hindgut138 84 of 4 0.90None
Larval fat body350 344 of 4 2.30Up
Larval trachea159 144 of 4 1.03None
Larval carcass115 74 of 4 0.75Down
S2 cells (growing)301 64 of 4 1.96Up
Whole fly154 44 of 4

Looking for FBgn0053198. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime