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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053200 through 18771 annotations produced 1 hits

ventrally-expressed-protein-D (ventrally-expressed-protein-D):

Annotation Number : CG33200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053200
Gbrowse : chr2R:18296155-18296700 (+) // 100.0 //
Probeset : 1639902_at
Accessions : protein= NP_788425;, nucleotide= NM_176245;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0053200.
VDRC has 1 RNAi stocks for FBgn0053200 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 34 of 429.30Up
Head59 74 of 4 9.50Up
Eye54 24 of 4 8.79Up
Thoracicoabdominal ganglion110 54 of 417.80Up
Salivary gland21 10 of 4 3.46Up
Crop6 10 of 4 1.00None
Midgut3 00 of 4 0.60None
Tubule6 00 of 4 1.00None
Hindgut4 10 of 4 0.80None
Heart4 01 of 4 0.79None
Fat body7 11 of 4 1.23None
Ovary2 00 of 4 0.40None
Testis3 10 of 4 0.60None
Male accessory glands4 10 of 4 0.70None
Virgin spermatheca4 11 of 4 0.73None
Mated spermatheca6 11 of 4 0.96None
Adult carcass4 20 of 4 0.70None
Larval CNS86 74 of 413.96Up
Larval Salivary gland9 22 of 4 1.55None
Larval midgut4 20 of 4 0.74None
Larval tubule2 00 of 4 0.30Down
Larval hindgut6 01 of 4 0.96None
Larval fat body8 11 of 4 1.30None
Larval trachea8 12 of 4 1.41None
Larval carcass9 10 of 4 1.53None
S2 cells (growing)7 11 of 4 1.24None
Whole fly6 11 of 4

Looking for FBgn0053200. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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