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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053207 through 18771 annotations produced 2 hits



baikal (pxb):

Annotation Number : CG33207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053207
Gbrowse : chr3R:11491907-11513658 (+) // 100.0 //
Probeset : 1630400_at
Accessions : protein= NP_788681; /// NP_788682;, nucleotide= NM_176504; /// NM_176505;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0053207.
BDGP gene expression has embryonic in situ data for CG33207: 63 pix of staining in 35 body parts.
VDRC has 6 RNAi stocks for FBgn0053207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.30None
Head1 00 of 4 0.30None
Eye2 10 of 4 0.55None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland4 00 of 4 1.00None
Crop1 00 of 4 0.40None
Midgut2 00 of 4 0.50None
Tubule8 10 of 4 1.90Up
Hindgut4 10 of 4 1.00None
Heart8 13 of 4 2.02None
Fat body2 20 of 4 0.54None
Ovary1 00 of 4 0.40None
Testis5 00 of 4 1.40None
Male accessory glands5 30 of 4 1.40None
Virgin spermatheca2 00 of 4 0.52None
Mated spermatheca4 10 of 4 1.12None
Adult carcass2 00 of 4 0.70None
Larval CNS17 24 of 4 4.15Up
Larval Salivary gland5 10 of 4 1.35None
Larval midgut1 00 of 4 0.40None
Larval tubule16 13 of 4 3.90Up
Larval hindgut1 00 of 4 0.26None
Larval fat body1 00 of 4 0.40None
Larval trachea2 00 of 4 0.66None
Larval carcass0 00 of 4 0.20None
S2 cells (growing)36 14 of 4 8.70Up
Whole fly4 10 of 4



baikal (pxb):

Annotation Number : CG33207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053207
Gbrowse : chr3R:11491907-11499383 (+) // 100.0 //
Probeset : 1640423_at
Accessions : protein= NP_788681; /// NP_788682;, nucleotide= NM_176504; /// NM_176505;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0053207.
BDGP gene expression has embryonic in situ data for CG33207: 63 pix of staining in 35 body parts.
VDRC has 6 RNAi stocks for FBgn0053207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 1.90None
Head5 11 of 4 0.90None
Eye4 10 of 4 0.66None
Thoracicoabdominal ganglion13 23 of 4 2.30None
Salivary gland11 40 of 4 1.95None
Crop2 10 of 4 0.50Down
Midgut5 10 of 4 1.00None
Tubule18 13 of 4 3.10Up
Hindgut9 21 of 4 1.60None
Heart4 10 of 4 0.68None
Fat body9 32 of 4 1.59None
Ovary1 00 of 4 0.30Down
Testis1 00 of 4 0.30Down
Male accessory glands3 20 of 4 0.60None
Virgin spermatheca16 14 of 4 2.67Up
Mated spermatheca21 33 of 4 3.45Up
Adult carcass7 30 of 4 1.20None
Larval CNS13 34 of 4 2.23Up
Larval Salivary gland3 10 of 4 0.55None
Larval midgut6 00 of 4 1.11None
Larval tubule8 21 of 4 1.40None
Larval hindgut2 00 of 4 0.41Down
Larval fat body8 31 of 4 1.30None
Larval trachea2 10 of 4 0.47Down
Larval carcass5 10 of 4 0.91None
S2 cells (growing)2 00 of 4 0.39Down
Whole fly6 00 of 4

Looking for FBgn0053207. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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