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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053208 through 18771 annotations produced 2 hits



mical (Mical):

Annotation Number : CG33208
Flybase ID : FBgn0053208
Gbrowse : chr3R:5828032-5867720 (-) // 99.68 //
Probeset : 1623984_s_at
Accessions : protein= NP_001138032; /// NP_788620; /// NP_788621; /// NP_788622; /// NP_788623; /// NP_788624; /// NP_788625; /// NP_788626; /// NP_788627;, nucleotide= NM_001144560; /// NM_176443; /// NM_176444; /// NM_176445; /// NM_176446; /// NM_176447; /// NM_176448; /// NM_176449; /// NM_176450;
Pathway : 0005829 // cytosol // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 00
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0053208.
BDGP gene expression has embryonic in situ data for MICAL: 8 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0053208 available for purchase.
VDRC has 8 RNAi stocks for FBgn0053208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 24 of 4 5.60Up
Head61 24 of 4 2.20Up
Eye48 14 of 4 1.73Up
Thoracicoabdominal ganglion95 114 of 4 3.40Up
Salivary gland13 50 of 4 0.48None
Crop119 54 of 4 4.30Up
Midgut19 31 of 4 0.70None
Tubule1 00 of 4 0.10Down
Hindgut47 24 of 4 1.70Up
Heart25 34 of 4 0.92None
Fat body18 50 of 4 0.64Down
Ovary31 24 of 4 1.10None
Testis14 12 of 4 0.50Down
Male accessory glands16 50 of 4 0.60None
Virgin spermatheca8 10 of 4 0.29Down
Mated spermatheca3 00 of 4 0.11Down
Adult carcass69 44 of 4 2.50Up
Larval CNS83 94 of 4 2.97Up
Larval Salivary gland20 01 of 4 0.73Down
Larval midgut20 20 of 4 0.72None
Larval tubule42 53 of 4 1.50None
Larval hindgut42 44 of 4 1.50Up
Larval fat body147 204 of 4 5.30Up
Larval trachea62 84 of 4 2.24Up
Larval carcass95 374 of 4 3.41None
S2 cells (growing)36 34 of 4 1.30None
Whole fly28 14 of 4



mical (Mical):

Annotation Number : CG33208
Flybase ID : FBgn0053208
Gbrowse : chr3R:5843964-5867720 (-) // 98.93 //
Probeset : 1636412_at
Accessions : protein= NP_001138032; /// NP_788620; /// NP_788621; /// NP_788622; /// NP_788623; /// NP_788624; /// NP_788625; /// NP_788626; /// NP_788627;, nucleotide= NM_001144560; /// NM_176443; /// NM_176444; /// NM_176445; /// NM_176446; /// NM_176447; /// NM_176448; /// NM_176449; /// NM_176450;
Pathway : 0005829 // cytosol // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 00
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0053208.
BDGP gene expression has embryonic in situ data for MICAL: 8 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0053208 available for purchase.
VDRC has 8 RNAi stocks for FBgn0053208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 04 of 4 0.10Down
Head2 00 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland5 10 of 4 0.05Down
Crop4 11 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule4 10 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body7 22 of 4 0.07Down
Ovary382 134 of 4 3.40Up
Testis334 74 of 4 3.00Up
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca6 12 of 4 0.05Down
Mated spermatheca7 12 of 4 0.07Down
Adult carcass9 21 of 4 0.10Down
Larval CNS3 22 of 4 0.03Down
Larval Salivary gland6 01 of 4 0.06Down
Larval midgut1 10 of 4 0.02Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.03Down
Larval fat body67 314 of 4 0.60None
Larval trachea3 10 of 4 0.04Down
Larval carcass3 00 of 4 0.03Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly112 74 of 4

Looking for FBgn0053208. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime