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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053213 through 18771 annotations produced 1 hits



(CG33213):

Annotation Number : CG33213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053213
Gbrowse : chr3R:23743898-23745167 (-) // 100.0 //
Probeset : 1628445_at
Accessions : protein= NP_788749;, nucleotide= NM_176572;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0053213.
BDGP gene expression has embryonic in situ data for CG33213: 10 pix of staining in 1 body parts.
BioGrid reports that CG33213 interacts with CG4788 CG5450 CG6156 CG6998 CG4216 CG4863 CG5362 CG6398 .
TRiP has 1 RNAi stocks for FBgn0053213 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.50None
Head13 13 of 4 0.20Down
Eye25 33 of 4 0.46Down
Thoracicoabdominal ganglion24 24 of 4 0.50Down
Salivary gland3 10 of 4 0.07Down
Crop13 22 of 4 0.20Down
Midgut5 20 of 4 0.10Down
Tubule5 10 of 4 0.10Down
Hindgut13 11 of 4 0.30Down
Heart8 32 of 4 0.16Down
Fat body5 60 of 4 0.11Down
Ovary124 44 of 4 2.30Up
Testis40 34 of 4 0.80None
Male accessory glands21 41 of 4 0.40Down
Virgin spermatheca18 31 of 4 0.34Down
Mated spermatheca14 11 of 4 0.27Down
Adult carcass8 30 of 4 0.20Down
Larval CNS121 134 of 4 2.23Up
Larval Salivary gland13 11 of 4 0.26Down
Larval midgut14 10 of 4 0.26Down
Larval tubule8 00 of 4 0.20Down
Larval hindgut20 43 of 4 0.38Down
Larval fat body9 20 of 4 0.20Down
Larval trachea34 34 of 4 0.63None
Larval carcass20 12 of 4 0.38Down
S2 cells (growing)73 04 of 4 1.36None
Whole fly54 94 of 4

Looking for FBgn0053213. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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