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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053218 through 18771 annotations produced 2 hits



(CG33218):

Annotation Number : CG33218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053218
Gbrowse : chrX:2224191-2224859 (+) // 100.0 //
Probeset : 1640719_at
Accessions : protein= NP_996332;, nucleotide= NM_206609;
FlyMine data for FBgn0053218.
VDRC has 4 RNAi stocks for FBgn0053218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye3 10 of 4 0.06Down
Thoracicoabdominal ganglion6 20 of 4 0.10Down
Salivary gland2 00 of 4 0.04Down
Crop4 10 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart2 00 of 4 0.04Down
Fat body3 20 of 4 0.06Down
Ovary4 01 of 4 0.10Down
Testis799 134 of 413.80Up
Male accessory glands4 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.07Down
Mated spermatheca2 11 of 4 0.05Down
Adult carcass3 20 of 4 0.10Down
Larval CNS3 12 of 4 0.06Down
Larval Salivary gland3 10 of 4 0.05Down
Larval midgut5 10 of 4 0.09Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.05Down
Larval fat body101 484 of 4 1.70None
Larval trachea6 61 of 4 0.11Down
Larval carcass4 00 of 4 0.08Down
S2 cells (growing)8 13 of 4 0.14Down
Whole fly57 14 of 4



/// (CG2854 /// CG33218):

Annotation Number : CG2854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040391
Gbrowse : chrX:2221160-2222974 (+) // 100.0 //
Probeset : 1640548_at
Accessions : protein= NP_569999;, nucleotide= NM_130643;
FlyMine data for FBgn0040391.
VDRC has 3 RNAi stocks for FBgn0040391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 00 of 4 0.10Down
Eye0 00 of 4 0.03Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland4 10 of 4 0.19Down
Crop1 00 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.04Down
Fat body1 00 of 4 0.05Down
Ovary2 00 of 4 0.10Down
Testis385 184 of 416.50Up
Male accessory glands5 30 of 4 0.20Down
Virgin spermatheca0 00 of 4 0.04Down
Mated spermatheca1 00 of 4 0.05Down
Adult carcass2 10 of 4 0.10Down
Larval CNS1 00 of 4 0.04Down
Larval Salivary gland1 00 of 4 0.07Down
Larval midgut0 00 of 4 0.03Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body20 121 of 4 0.90None
Larval trachea0 00 of 4 0.04Down
Larval carcass1 00 of 4 0.05Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly23 13 of 4

Looking for FBgn0053218. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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