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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053233 through 18771 annotations produced 2 hits



(CG33233):

Annotation Number : CG12036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053233
Gbrowse : chr3L:2659638-2660751 (+) // 100.0 //
Probeset : 1623149_at
Accessions : protein= NP_995978; /// NP_995979;, nucleotide= NM_206256; /// NM_206257;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0053233.
VDRC has 1 RNAi stocks for FBgn0053233 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 1.20None
Head3 ± 10 of 4 0.50None
Eye2 ± 00 of 4 0.40None
Thoracicoabdominal ganglion13 ± 20 of 4 1.90None
Salivary gland19 ± 20 of 4 2.94Up
Crop4 ± 20 of 4 0.60None
Midgut9 ± 20 of 4 1.30None
Tubule8 ± 10 of 4 1.30None
Hindgut9 ± 10 of 4 1.40None
Heart3 ± 10 of 4 0.47None
Fat body3 ± 30 of 4 0.49None
Ovary2 ± 00 of 4 0.40None
Testis8 ± 12 of 4 1.20None
Male accessory glands7 ± 30 of 4 1.10None
Virgin spermatheca2 ± 10 of 4 0.37None
Mated spermatheca8 ± 30 of 4 1.19None
Adult carcass19 ± 50 of 4 2.90None
Larval CNS4 ± 30 of 4 0.73None
Larval Salivary gland7 ± 10 of 4 1.07None
Larval midgut12 ± 11 of 4 1.85Up
Larval tubule6 ± 30 of 4 1.00None
Larval hindgut6 ± 10 of 4 1.02None
Larval fat body4 ± 10 of 4 0.70None
Larval trachea3 ± 10 of 4 0.59None
Larval carcass3 ± 10 of 4 0.52None
S2 cells (growing)1 ± 00 of 4 0.24Down
Whole fly6 ± 10 of 4



(CG33233):

Annotation Number : CG12036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053233
Gbrowse : chr3L:2659638-2660751 (+) // 100.0 //
Probeset : 1633658_a_at
Accessions : protein= NP_995978; /// NP_995979;, nucleotide= NM_206256; /// NM_206257;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0053233.
VDRC has 1 RNAi stocks for FBgn0053233 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.11Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.10Down
Salivary gland9 ± 20 of 4 0.37Down
Crop5 ± 00 of 4 0.20Down
Midgut3 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.03Down
Fat body5 ± 10 of 4 0.23Down
Ovary2 ± 10 of 4 0.10Down
Testis411 ± 384 of 416.10Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 10 of 4 0.07Down
Mated spermatheca2 ± 10 of 4 0.11Down
Adult carcass4 ± 00 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.07Down
Larval Salivary gland4 ± 10 of 4 0.19Down
Larval midgut5 ± 10 of 4 0.22Down
Larval tubule3 ± 20 of 4 0.10Down
Larval hindgut3 ± 00 of 4 0.13Down
Larval fat body37 ± 182 of 4 1.50None
Larval trachea1 ± 00 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.11Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly25 ± 44 of 4

Looking for FBgn0053233. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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