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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053234 through 18771 annotations produced 1 hits



(CG33234):

Annotation Number : CG12036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053234
Gbrowse : chr3L:2659662-2663005 (+) // 100.0 //
Probeset : 1632116_at
Accessions : protein= NP_001097482; /// NP_001097483;, nucleotide= NM_001104012; /// NM_001104013;
FlyMine data for FBgn0053234.
VDRC has 2 RNAi stocks for FBgn0053234 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20None
Head4 ± 10 of 4 0.40None
Eye1 ± 00 of 4 0.13None
Thoracicoabdominal ganglion3 ± 10 of 4 0.30None
Salivary gland7 ± 30 of 4 0.72None
Crop2 ± 00 of 4 0.20None
Midgut11 ± 10 of 4 1.00None
Tubule2 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.40None
Heart3 ± 20 of 4 0.33None
Fat body4 ± 10 of 4 0.38None
Ovary2 ± 10 of 4 0.30None
Testis108 ± 54 of 410.10Up
Male accessory glands6 ± 30 of 4 0.60None
Virgin spermatheca4 ± 20 of 4 0.43None
Mated spermatheca6 ± 10 of 4 0.61None
Adult carcass10 ± 50 of 4 1.00None
Larval CNS1 ± 00 of 4 0.10None
Larval Salivary gland6 ± 20 of 4 0.61None
Larval midgut10 ± 20 of 4 1.00None
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut6 ± 20 of 4 0.62None
Larval fat body19 ± 60 of 4 1.80None
Larval trachea0 ± 00 of 4 0.09None
Larval carcass2 ± 00 of 4 0.25None
S2 cells (growing)1 ± 00 of 4 0.15None
Whole fly10 ± 30 of 4

Looking for FBgn0053234. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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