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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053243 through 18771 annotations produced 1 hits



Stellate orphon /// Ste:CG33236 /// Ste:CG33237 /// Ste:CG33238 /// Ste:CG33239 /// Ste:CG33240 /// Ste:CG33241 /// Ste:CG33242 /// Ste:CG33243 /// Ste:CG33244 /// Ste:CG33245 /// Ste:CG33246 /// Ste:CG33247 (Ste12DOR /// Ste:CG33236 /// Ste:CG33237 /// Ste:CG33238 /// Ste:CG33239 /// Ste:CG33240 /// Ste:CG33241 /// Ste:CG33242 /// Ste:CG33243 /// Ste:CG33244 /// Ste:CG33245 /// Ste:CG33246 /// Ste:CG33247):

Annotation Number : CG32605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044817 /// FBgn0053236 /// FBgn0053237 /// FBgn0053238 /// FBgn0053239 /// FBgn0053240 /// FBgn0053241 /// FBgn0053242 /// FBgn0053243 /// FBgn0053244 /// FBgn0053245 /// FBgn0053246 /// FBgn0053247
Gbrowse : chrUextra:14266909-20944357 (+) // 91.82 // /// chrUextra:15803403-24369497 (+) // 90.39 // /// chrX:13940925-13955428 (-) // 100.0 // /// chrX:13940929-13954160 (-) // 91.05 // /// chrX:13940929-13952822 (-) // 82.44 // /// chrX:13943433-13955361 (-) // 75.39 // /// chrX:13940929-13951621 (-) // 74.16 // /// chrX:13944703-13955361 (-) // 66.9 // /// chrX:13940929-13950352 (-) // 65.68 // /// chrX:13940929-13949083 (-) // 58.58 // /// chrX:13947240-13955361 (-) // 58.48 // /// chrX:13948510-13955441 (-) // 49.94 // /// chrX:13940929-13947814 (-) // 49.62 // /// chrX:13949779-13955301 (-) // 40.04 //
Probeset : 1630855_s_at
Accessions : protein= NP_727747; /// NP_996421; /// NP_996422; /// NP_996423; /// NP_996424; /// NP_996425; /// NP_996426; /// NP_996427; /// NP_996428; /// NP_996429; /// NP_996430; /// NP_996431; /// NP_996432;, nucleotide= NM_167390; /// NM_206698; /// NM_206699; /// NM_206700; /// NM_206701; /// NM_206702; /// NM_206703; /// NM_206704; /// NM_206705; /// NM_206706; /// NM_206707; /// NM_206708; /// NM_206709;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from sequence
Interpro : 0019887 // protein kinase regulator activity // inferred from sequence or structural similarity /// 0019887 // protein k
FlyMine data for FBgn0044817 /// FBgn0053236 /// FBgn0053237 /// FBgn0053238 /// FBgn0053239 /// FBgn0053240 /// FBgn0053241 /// FBgn0053242 /// FBgn0053243 /// FBgn0053244 /// FBgn0053245 /// FBgn0053246 /// FBgn0053247.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 132 of 4 3.90None
Head13 33 of 4 1.70None
Eye11 12 of 4 1.38None
Thoracicoabdominal ganglion27 54 of 4 3.40Up
Salivary gland66 44 of 4 8.17Up
Crop39 133 of 4 4.90None
Midgut6 10 of 4 0.80None
Tubule9 01 of 4 1.10None
Hindgut22 14 of 4 2.70Up
Heart4 10 of 4 0.50None
Fat body38 233 of 4 4.74None
Ovary3 00 of 4 0.40Down
Testis164 684 of 420.10None
Male accessory glands712 344 of 487.10Up
Virgin spermatheca33 54 of 4 4.08Up
Mated spermatheca44 164 of 4 5.43None
Adult carcass3 00 of 4 0.40Down
Larval CNS47 204 of 4 5.78Up
Larval Salivary gland8 21 of 4 0.98None
Larval midgut9 11 of 4 1.14None
Larval tubule14 04 of 4 1.80Up
Larval hindgut10 04 of 4 1.31Up
Larval fat body25 33 of 4 3.10Up
Larval trachea9 32 of 4 1.20None
Larval carcass7 12 of 4 0.91None
S2 cells (growing)8 02 of 4 1.05None
Whole fly8 00 of 4

Looking for FBgn0053243. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime