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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053258 through 18771 annotations produced 1 hits


(CG33258):

Annotation Number : CR33258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053258
Gbrowse : chr3L:16075691-16076574 (+) // 100.0 //
Probeset : 1634514_at
Accessions : protein= NP_001034027;, nucleotide= NM_001038938;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0053258.
VDRC has 1 RNAi stocks for FBgn0053258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 21 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland13 ± 40 of 4 0.03Down
Crop3 ± 10 of 4 0.00Down
Midgut42 ± 104 of 4 0.10Down
Tubule6982 ± 1914 of 418.20Up
Hindgut2599 ± 1204 of 4 6.80Up
Heart18 ± 102 of 4 0.05Down
Fat body12 ± 33 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands13 ± 32 of 4 0.00Down
Virgin spermatheca7 ± 10 of 4 0.02Down
Mated spermatheca9 ± 11 of 4 0.02Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.01Down
Larval tubule7 ± 01 of 4 0.00Down
Larval hindgut4 ± 21 of 4 0.01Down
Larval fat body9 ± 40 of 4 0.00Down
Larval trachea2 ± 20 of 4 0.01Down
Larval carcass1 ± 10 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly383 ± 514 of 4

Looking for FBgn0053258. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime