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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053260 through 18771 annotations produced 1 hits



/// GAGA factor (CG33260 /// Trl):

Annotation Number : CG13470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013263 /// FBgn0053260
Gbrowse : chr3L:14753678-14754821 (-) // 100.0 //
Probeset : 1633713_at
Accessions : protein= NP_001036605;, nucleotide= NM_001043140;
Pathway : via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0007049 // cell cycle // inferred
Interpro : DNA-dependent // inferred from direct assay /// 0045893 // positive regulation of transcription
FlyMine data for FBgn0013263 /// FBgn0053260.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head1 00 of 4 0.40None
Eye2 10 of 4 0.53None
Thoracicoabdominal ganglion3 10 of 4 0.60None
Salivary gland125 100 of 423.73Up
Crop7 20 of 4 1.40None
Midgut3 00 of 4 0.60None
Tubule5 10 of 4 1.00None
Hindgut3 20 of 4 0.70None
Heart5 10 of 4 1.05None
Fat body5 40 of 4 1.00None
Ovary4 20 of 4 0.90None
Testis57 14 of 410.80Up
Male accessory glands2 00 of 4 0.50None
Virgin spermatheca10 10 of 4 1.94None
Mated spermatheca8 20 of 4 1.63None
Adult carcass2 00 of 4 0.40None
Larval CNS3 10 of 4 0.61None
Larval Salivary gland24 10 of 4 4.59Up
Larval midgut9 20 of 4 1.74None
Larval tubule28 50 of 4 5.40Up
Larval hindgut3 10 of 4 0.56None
Larval fat body48 50 of 4 9.20Up
Larval trachea12 20 of 4 2.33Up
Larval carcass2 00 of 4 0.42None
S2 cells (growing)16 20 of 4 3.08Up
Whole fly5 10 of 4

Looking for FBgn0053260. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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