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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053263 through 18771 annotations produced 2 hits



(CG33263):

Annotation Number : CG33263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053263
Gbrowse : chr3L:13416584-13417268 (-) // 100.0 //
Probeset : 1631294_at
Accessions : protein= NP_996072;, nucleotide= NM_206350;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0053263.
VDRC has 4 RNAi stocks for FBgn0053263 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.10None
Head4 ± 10 of 4 1.40None
Eye2 ± 00 of 4 0.73None
Thoracicoabdominal ganglion2 ± 00 of 4 0.90None
Salivary gland17 ± 50 of 4 6.27None
Crop4 ± 10 of 4 1.50None
Midgut7 ± 00 of 4 2.40Up
Tubule5 ± 00 of 4 1.80Up
Hindgut4 ± 10 of 4 1.70None
Heart2 ± 00 of 4 0.95None
Fat body6 ± 30 of 4 2.32None
Ovary1 ± 00 of 4 0.50None
Testis2 ± 10 of 4 1.00None
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca4 ± 10 of 4 1.41None
Mated spermatheca3 ± 10 of 4 1.26None
Adult carcass3 ± 00 of 4 1.10None
Larval CNS1 ± 10 of 4 0.63None
Larval Salivary gland8 ± 30 of 4 2.89None
Larval midgut14 ± 00 of 4 5.22Up
Larval tubule2 ± 00 of 4 0.80None
Larval hindgut5 ± 00 of 4 1.82None
Larval fat body2 ± 10 of 4 0.80None
Larval trachea2 ± 20 of 4 0.86None
Larval carcass4 ± 10 of 4 1.62None
S2 cells (growing)4 ± 00 of 4 1.73None
Whole fly2 ± 00 of 4



/// (CG14106 /// CG33263):

Annotation Number : CG14106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260459
Gbrowse : chr3L:13417669-13418768 (-) // 100.0 //
Probeset : 1640343_at
Accessions : protein= NP_648643;, nucleotide= NM_140386;
FlyMine data for FBgn0260459.
VDRC has 1 RNAi stocks for FBgn0260459 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head4 ± 00 of 4 0.20Down
Eye2 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.20Down
Salivary gland7 ± 20 of 4 0.23Down
Crop3 ± 00 of 4 0.10Down
Midgut9 ± 10 of 4 0.30Down
Tubule4 ± 10 of 4 0.20Down
Hindgut8 ± 10 of 4 0.30Down
Heart2 ± 10 of 4 0.09Down
Fat body10 ± 10 of 4 0.33Down
Ovary2 ± 10 of 4 0.10Down
Testis469 ± 174 of 415.40Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca7 ± 00 of 4 0.26Down
Mated spermatheca4 ± 00 of 4 0.13Down
Adult carcass6 ± 20 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.09Down
Larval Salivary gland5 ± 10 of 4 0.16Down
Larval midgut7 ± 10 of 4 0.24Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut3 ± 00 of 4 0.12Down
Larval fat body38 ± 173 of 4 1.20None
Larval trachea3 ± 30 of 4 0.10Down
Larval carcass3 ± 10 of 4 0.10Down
S2 cells (growing)5 ± 10 of 4 0.17Down
Whole fly30 ± 14 of 4

Looking for FBgn0053263. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime