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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053265 through 18771 annotations produced 1 hits



Mucin 68E (Muc68E):

Annotation Number : CG33265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053265
Gbrowse : chr3L:11960679-11966079 (-) // 100.0 //
Probeset : 1623416_at
Accessions : protein= NP_996064;, nucleotide= NM_206342;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0053265.
VDRC has 2 RNAi stocks for FBgn0053265 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.07Down
Crop6 ± 20 of 4 0.10Down
Midgut1668 ± 914 of 420.50Up
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.04Down
Fat body4 ± 30 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca5 ± 20 of 4 0.06Down
Adult carcass9 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 00 of 4 0.03Down
Larval midgut173 ± 174 of 4 2.14Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea4 ± 30 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)3 ± 10 of 4 0.05Down
Whole fly81 ± 214 of 4

Looking for FBgn0053265. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime