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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053272 through 18771 annotations produced 1 hits



inverted repeat 1 (CG33272):

Annotation Number : CG33272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053272
Gbrowse : chr3L:11501745-11502003 (+) // 91.76 // /// chr3L:11503422-11503689 (-) // 100.0 // /// chr3L:11574953-11575216 (-) // 95.51 // /// chr3L:11571387-11571653 (-) // 95.51 // /// chr3L:11570278-11570535 (-) // 92.51 //
Probeset : 1639005_x_at
Accessions : protein= NP_996045;, nucleotide= NM_206323;
FlyMine data for FBgn0053272.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 44 of 4 1.10None
Head13 22 of 4 0.50None
Eye6 10 of 4 0.22Down
Thoracicoabdominal ganglion26 104 of 4 0.90None
Salivary gland49 73 of 4 1.72None
Crop27 24 of 4 1.00None
Midgut35 24 of 4 1.30None
Tubule11 01 of 4 0.40Down
Hindgut34 44 of 4 1.20None
Heart5 11 of 4 0.19Down
Fat body31 94 of 4 1.11None
Ovary11 03 of 4 0.40Down
Testis27 44 of 4 1.00None
Male accessory glands37 54 of 4 1.30None
Virgin spermatheca16 14 of 4 0.58None
Mated spermatheca23 43 of 4 0.82None
Adult carcass41 54 of 4 1.50None
Larval CNS18 84 of 4 0.67None
Larval Salivary gland46 64 of 4 1.64None
Larval midgut210 141 of 4 7.41Up
Larval tubule25 24 of 4 0.90None
Larval hindgut17 24 of 4 0.62None
Larval fat body56 34 of 4 2.00Up
Larval trachea8 30 of 4 0.31Down
Larval carcass19 12 of 4 0.68None
S2 cells (growing)65 24 of 4 2.32Up
Whole fly28 44 of 4

Looking for FBgn0053272. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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