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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053278 through 18771 annotations produced 1 hits



(CG33278):

Annotation Number : CG18656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053278
Gbrowse : chr3L:7443952-7445276 (+) // 100.0 //
Probeset : 1640966_at
Accessions : protein= NP_996011;, nucleotide= NM_206289;
FlyMine data for FBgn0053278.
BDGP gene expression has embryonic in situ data for CG33278: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0053278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.20Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland7 ± 20 of 4 0.35Down
Crop4 ± 00 of 4 0.20Down
Midgut0 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 11 of 4 0.20Down
Heart1 ± 00 of 4 0.06Down
Fat body2 ± 20 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis390 ± 174 of 419.10Up
Male accessory glands1 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass4 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.06Down
Larval Salivary gland0 ± 00 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule3 ± 11 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.21Down
Larval fat body53 ± 323 of 4 2.60None
Larval trachea2 ± 20 of 4 0.10Down
Larval carcass1 ± 10 of 4 0.09Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly20 ± 24 of 4

Looking for FBgn0053278. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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