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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053281 through 18771 annotations produced 2 hits



(CG33281):

Annotation Number : CG15407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053281
Gbrowse : chr2L:3324242-3326633 (+) // 100.0 //
Probeset : 1634418_at
Accessions : protein= NP_995620;, nucleotide= NM_205898;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015145 // monosaccharide transmembrane trans
FlyMine data for FBgn0053281.
BDGP gene expression has embryonic in situ data for CG33281: 13 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0053281 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.10Down
Head10 ± 14 of 4 0.30Down
Eye3 ± 01 of 4 0.08Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland10 ± 31 of 4 0.27Down
Crop4 ± 10 of 4 0.10Down
Midgut7 ± 00 of 4 0.20Down
Tubule1936 ± 4304 of 448.80Up
Hindgut4 ± 11 of 4 0.10Down
Heart72 ± 24 of 4 1.83Up
Fat body20 ± 223 of 4 0.52None
Ovary1 ± 00 of 4 0.00Down
Testis265 ± 64 of 4 6.70Up
Male accessory glands8 ± 10 of 4 0.20Down
Virgin spermatheca8 ± 32 of 4 0.21Down
Mated spermatheca10 ± 13 of 4 0.26Down
Adult carcass24 ± 24 of 4 0.60Down
Larval CNS4 ± 02 of 4 0.10Down
Larval Salivary gland4 ± 01 of 4 0.11Down
Larval midgut12 ± 23 of 4 0.32Down
Larval tubule3769 ± 1314 of 495.00Up
Larval hindgut48 ± 44 of 4 1.23None
Larval fat body14 ± 13 of 4 0.40Down
Larval trachea3 ± 22 of 4 0.09Down
Larval carcass6 ± 20 of 4 0.17Down
S2 cells (growing)4 ± 02 of 4 0.11Down
Whole fly39 ± 34 of 4



(CG33281):

Annotation Number : CG15407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053281
Gbrowse : chr2L:3324242-3326633 (+) // 100.0 //
Probeset : 1637123_a_at
Accessions : protein= NP_995620;, nucleotide= NM_205898;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015145 // monosaccharide transmembrane trans
FlyMine data for FBgn0053281.
BDGP gene expression has embryonic in situ data for CG33281: 13 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0053281 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.20Down
Head8 ± 20 of 4 0.30Down
Eye4 ± 00 of 4 0.18Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland28 ± 50 of 4 1.07None
Crop11 ± 31 of 4 0.40Down
Midgut6 ± 10 of 4 0.20Down
Tubule1363 ± 3294 of 451.60Up
Hindgut9 ± 20 of 4 0.30Down
Heart31 ± 14 of 4 1.19None
Fat body19 ± 160 of 4 0.74None
Ovary2 ± 00 of 4 0.10Down
Testis155 ± 34 of 4 5.90Up
Male accessory glands10 ± 30 of 4 0.40None
Virgin spermatheca21 ± 10 of 4 0.81None
Mated spermatheca25 ± 81 of 4 0.95None
Adult carcass12 ± 40 of 4 0.50None
Larval CNS11 ± 30 of 4 0.43None
Larval Salivary gland6 ± 20 of 4 0.24Down
Larval midgut19 ± 53 of 4 0.72None
Larval tubule2629 ± 1114 of 499.60Up
Larval hindgut33 ± 24 of 4 1.27None
Larval fat body7 ± 20 of 4 0.30Down
Larval trachea5 ± 20 of 4 0.21Down
Larval carcass12 ± 10 of 4 0.48None
S2 cells (growing)3 ± 00 of 4 0.14Down
Whole fly26 ± 53 of 4

Looking for FBgn0053281. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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