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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053283 through 18771 annotations produced 1 hits



(CR33283):

Annotation Number : CG33283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053283
Gbrowse : chr3L:20971864-20972750 (+) // 100.0 //
Probeset : 1632754_at
Accessions : protein= NP_996128;, nucleotide= NM_206406;
Interpro : 0004181 // metallocarboxypeptidase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // in
FlyMine data for FBgn0053283.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.20None
Head3 10 of 4 1.10None
Eye2 10 of 4 0.76None
Thoracicoabdominal ganglion3 10 of 4 0.90None
Salivary gland7 20 of 4 2.01None
Crop5 20 of 4 1.40None
Midgut3 10 of 4 0.90None
Tubule3 00 of 4 1.00None
Hindgut5 10 of 4 1.50None
Heart1 00 of 4 0.44None
Fat body4 20 of 4 1.16None
Ovary1 00 of 4 0.50None
Testis5 12 of 4 1.70None
Male accessory glands3 10 of 4 0.90None
Virgin spermatheca4 00 of 4 1.18None
Mated spermatheca2 00 of 4 0.56None
Adult carcass8 10 of 4 2.40Up
Larval CNS2 20 of 4 0.76None
Larval Salivary gland2 11 of 4 0.77None
Larval midgut2 10 of 4 0.67None
Larval tubule2 10 of 4 0.80None
Larval hindgut2 10 of 4 0.80None
Larval fat body4 10 of 4 1.40None
Larval trachea2 30 of 4 0.84None
Larval carcass2 00 of 4 0.62None
S2 cells (growing)1 00 of 4 0.55None
Whole fly3 12 of 4

Looking for FBgn0053283. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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