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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053284 through 18771 annotations produced 1 hits



(CG33284):

Annotation Number : S.C3L002668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053284
Gbrowse : chr3L:21117390-21120220 (+) // 100.0 //
Probeset : 1623155_at
Accessions : protein= NP_996131;, nucleotide= NM_206409;
FlyMine data for FBgn0053284.
VDRC has 3 RNAi stocks for FBgn0053284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.10Down
Head11 ± 31 of 4 0.10Down
Eye4 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion13 ± 12 of 4 0.10Down
Salivary gland30 ± 33 of 4 0.24Down
Crop18 ± 14 of 4 0.20Down
Midgut23 ± 11 of 4 0.20Down
Tubule12 ± 11 of 4 0.10Down
Hindgut14 ± 23 of 4 0.10Down
Heart6 ± 00 of 4 0.05Down
Fat body14 ± 44 of 4 0.12Down
Ovary7 ± 03 of 4 0.10Down
Testis1644 ± 284 of 413.10Up
Male accessory glands22 ± 24 of 4 0.20Down
Virgin spermatheca19 ± 24 of 4 0.15Down
Mated spermatheca13 ± 14 of 4 0.11Down
Adult carcass21 ± 44 of 4 0.20Down
Larval CNS11 ± 14 of 4 0.09Down
Larval Salivary gland13 ± 32 of 4 0.11Down
Larval midgut16 ± 30 of 4 0.13Down
Larval tubule12 ± 23 of 4 0.10Down
Larval hindgut13 ± 12 of 4 0.11Down
Larval fat body123 ± 474 of 4 1.00None
Larval trachea15 ± 34 of 4 0.12Down
Larval carcass16 ± 11 of 4 0.13Down
S2 cells (growing)15 ± 04 of 4 0.13Down
Whole fly125 ± 124 of 4

Looking for FBgn0053284. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime