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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053289 through 18771 annotations produced 1 hits



(CG33289):

Annotation Number : CG33289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053289
Gbrowse : chr3L:21527678-21529329 (+) // 100.0 //
Probeset : 1627951_at
Accessions : protein= NP_996138;, nucleotide= NM_206416;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre
FlyMine data for FBgn0053289.
TRiP has 1 RNAi stocks for FBgn0053289 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head8 ± 10 of 4 5.20Up
Eye1 ± 00 of 4 1.30None
Thoracicoabdominal ganglion1 ± 00 of 4 0.80None
Salivary gland7 ± 30 of 4 5.18None
Crop2 ± 10 of 4 1.90None
Midgut7 ± 20 of 4 4.70None
Tubule2 ± 00 of 4 1.60None
Hindgut2 ± 10 of 4 1.70None
Heart1 ± 00 of 4 0.92None
Fat body7 ± 40 of 4 4.59None
Ovary2 ± 00 of 4 1.50None
Testis5 ± 00 of 4 3.60Up
Male accessory glands9 ± 00 of 4 6.00Up
Virgin spermatheca12 ± 30 of 4 8.13None
Mated spermatheca6 ± 20 of 4 4.16None
Adult carcass6 ± 10 of 4 4.50Up
Larval CNS1 ± 10 of 4 0.85None
Larval Salivary gland2 ± 10 of 4 1.92None
Larval midgut1 ± 00 of 4 0.90None
Larval tubule2 ± 00 of 4 1.50None
Larval hindgut1 ± 00 of 4 1.21None
Larval fat body2 ± 10 of 4 1.90None
Larval trachea1 ± 00 of 4 0.72None
Larval carcass4 ± 10 of 4 3.18None
S2 cells (growing)1 ± 00 of 4 0.85None
Whole fly1 ± 00 of 4

Looking for FBgn0053289. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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