FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053294 through 18771 annotations produced 1 hits

():

Annotation Number : CR33294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053294
Gbrowse : chr3R:19945-21871 (+) // 100.0 //
Probeset : 1625550_at
Accessions : protein= , nucleotide=
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from elec
FlyMine data for FBgn0053294.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	3 of 4	1.00	None
Head	11 ± 2	1 of 4	1.40	None
Eye	9 ± 2	1 of 4	1.15	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.50	None
Salivary gland	161 ± 7	4 of 4	20.21	Up
Crop	7 ± 1	0 of 4	1.00	None
Midgut	5 ± 1	0 of 4	0.60	None
Tubule	2 ± 1	0 of 4	0.30	Down
Hindgut	9 ± 2	0 of 4	1.10	None
Heart	4 ± 1	0 of 4	0.52	None
Fat body	11 ± 0	2 of 4	1.38	None
Ovary	5 ± 0	0 of 4	0.60	None
Testis	4 ± 1	0 of 4	0.60	None
Male accessory glands	24 ± 1	3 of 4	3.00	Up
Virgin spermatheca	10 ± 1	0 of 4	1.28	None
Mated spermatheca	11 ± 1	1 of 4	1.47	None
Adult carcass	19 ± 3	3 of 4	2.50	Up
Larval CNS	5 ± 0	0 of 4	0.63	None
Larval Salivary gland	7 ± 2	0 of 4	0.96	None
Larval midgut	9 ± 0	0 of 4	1.17	None
Larval tubule	9 ± 1	0 of 4	1.20	None
Larval hindgut	6 ± 0	0 of 4	0.81	None
Larval fat body	8 ± 3	0 of 4	1.10	None
Larval trachea	17 ± 7	3 of 4	2.22	None
Larval carcass	5 ± 1	0 of 4	0.73	None
S2 cells (growing)	26 ± 2	4 of 4	3.31	Up
Whole fly	8 ± 1	1 of 4

Looking for FBgn0053294. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720