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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053296 through 18771 annotations produced 1 hits



(CG33296):

Annotation Number : CG33296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053296
Gbrowse : chr2L:7714096-7716187 (-) // 100.0 //
Probeset : 1627994_at
Accessions : protein= NP_995644;, nucleotide= NM_205922;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0015293 // symporter ac
FlyMine data for FBgn0053296.
Homophila reports that CG33296 is a close match (5e-20) to human gene DAT1;SLC6A3 (NP_001035), a gene associated with {Attention-deficit hyperactivity disorder, susceptibility to}, 143465 (2);{Major affective disorder}, 125480 (3);{Nicotine dependence, protection against}, 188890 (3).
VDRC has 2 RNAi stocks for FBgn0053296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 134 of 423.00Up
Head120 144 of 4 8.90Up
Eye5 02 of 4 0.42Down
Thoracicoabdominal ganglion695 324 of 451.40Up
Salivary gland19 02 of 4 1.44Up
Crop7 11 of 4 0.50Down
Midgut10 13 of 4 0.80None
Tubule11 32 of 4 0.80None
Hindgut17 14 of 4 1.30None
Heart1739 1754 of 4128.63Up
Fat body85 504 of 4 6.28None
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands8 21 of 4 0.60None
Virgin spermatheca11 13 of 4 0.88None
Mated spermatheca5 12 of 4 0.41Down
Adult carcass145 94 of 410.80Up
Larval CNS4 14 of 4 0.34Down
Larval Salivary gland5 10 of 4 0.43Down
Larval midgut2 00 of 4 0.19Down
Larval tubule8 12 of 4 0.60Down
Larval hindgut2 00 of 4 0.21Down
Larval fat body4 10 of 4 0.30Down
Larval trachea2 31 of 4 0.17Down
Larval carcass6 02 of 4 0.52Down
S2 cells (growing)1 00 of 4 0.14Down
Whole fly13 14 of 4

Looking for FBgn0053296. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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