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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053299 through 18771 annotations produced 1 hits



(CG33299):

Annotation Number : CG33299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053299
Gbrowse : chr2L:9656506-9657226 (+) // 100.0 //
Probeset : 1635178_at
Accessions : protein= NP_995671;, nucleotide= NM_205949;
FlyMine data for FBgn0053299.
VDRC has 3 RNAi stocks for FBgn0053299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.80None
Head5 ± 11 of 4 1.50None
Eye6 ± 21 of 4 1.76None
Thoracicoabdominal ganglion5 ± 10 of 4 1.50None
Salivary gland7 ± 30 of 4 2.13None
Crop8 ± 10 of 4 2.50Up
Midgut9 ± 01 of 4 2.60Up
Tubule7 ± 10 of 4 2.20Up
Hindgut5 ± 10 of 4 1.70None
Heart3 ± 10 of 4 1.04None
Fat body7 ± 41 of 4 2.23None
Ovary4 ± 00 of 4 1.20None
Testis4 ± 11 of 4 1.30None
Male accessory glands9 ± 30 of 4 2.60None
Virgin spermatheca9 ± 01 of 4 2.70Up
Mated spermatheca10 ± 21 of 4 2.91Up
Adult carcass8 ± 21 of 4 2.30None
Larval CNS2 ± 10 of 4 0.60None
Larval Salivary gland5 ± 10 of 4 1.60None
Larval midgut6 ± 10 of 4 1.77None
Larval tubule5 ± 00 of 4 1.50None
Larval hindgut8 ± 12 of 4 2.41None
Larval fat body11 ± 31 of 4 3.30None
Larval trachea2 ± 10 of 4 0.63None
Larval carcass6 ± 10 of 4 1.85None
S2 cells (growing)3 ± 10 of 4 0.99None
Whole fly3 ± 00 of 4

Looking for FBgn0053299. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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