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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053300 through 18771 annotations produced 1 hits



Mucin 30E (Muc30E):

Annotation Number : CG33300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053300
Gbrowse : chr2L:9897952-9903058 (-) // 95.88 // /// chr2L:9898773-9902560 (-) // 65.3 //
Probeset : 1641356_at
Accessions : protein= NP_995676;, nucleotide= NM_205954;
FlyMine data for FBgn0053300.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.70None
Head5 10 of 4 0.50None
Eye4 11 of 4 0.39Down
Thoracicoabdominal ganglion5 20 of 4 0.50None
Salivary gland14 20 of 4 1.37None
Crop7 21 of 4 0.70None
Midgut6 20 of 4 0.60None
Tubule6 00 of 4 0.70Down
Hindgut6 00 of 4 0.60None
Heart3 00 of 4 0.32Down
Fat body14 62 of 4 1.35None
Ovary4 00 of 4 0.40Down
Testis34 24 of 4 3.30Up
Male accessory glands6 40 of 4 0.70None
Virgin spermatheca4 00 of 4 0.45Down
Mated spermatheca8 30 of 4 0.82None
Adult carcass3 10 of 4 0.30Down
Larval CNS10 10 of 4 0.98None
Larval Salivary gland6 30 of 4 0.60None
Larval midgut8 00 of 4 0.81None
Larval tubule4 10 of 4 0.40Down
Larval hindgut6 00 of 4 0.65None
Larval fat body9 10 of 4 1.00None
Larval trachea1 20 of 4 0.19Down
Larval carcass4 10 of 4 0.40Down
S2 cells (growing)7 10 of 4 0.71None
Whole fly10 13 of 4

Looking for FBgn0053300. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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