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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053318 through 18771 annotations produced 1 hits



():

Annotation Number : CG33318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053318
Gbrowse : chr2L:20923954-20924534 (+) // 100.0 //
Probeset : 1638885_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0053318.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 22 of 4 0.20Down
Head6 ± 20 of 4 0.20Down
Eye6 ± 12 of 4 0.15Down
Thoracicoabdominal ganglion6 ± 13 of 4 0.20Down
Salivary gland143 ± 174 of 4 3.46Up
Crop14 ± 24 of 4 0.40None
Midgut4 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut6 ± 12 of 4 0.20Down
Heart3 ± 11 of 4 0.10Down
Fat body13 ± 24 of 4 0.33None
Ovary2 ± 01 of 4 0.10Down
Testis515 ± 444 of 412.50Up
Male accessory glands11 ± 21 of 4 0.30None
Virgin spermatheca29 ± 24 of 4 0.71None
Mated spermatheca30 ± 24 of 4 0.73None
Adult carcass12 ± 41 of 4 0.30None
Larval CNS5 ± 14 of 4 0.13Down
Larval Salivary gland7 ± 13 of 4 0.19None
Larval midgut3 ± 11 of 4 0.07Down
Larval tubule4 ± 11 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.11Down
Larval fat body181 ± 814 of 4 4.40None
Larval trachea8 ± 52 of 4 0.20Down
Larval carcass8 ± 02 of 4 0.19None
S2 cells (growing)5 ± 13 of 4 0.13Down
Whole fly41 ± 104 of 4

Looking for FBgn0053318. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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