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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053325 through 18771 annotations produced 1 hits



(CG33325):

Annotation Number : CG33325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053325
Gbrowse : chr3R:4504675-4506052 (-) // 100.0 //
Probeset : 1633255_at
Accessions : protein= NP_996182;, nucleotide= NM_206460;
FlyMine data for FBgn0053325.
VDRC has 2 RNAi stocks for FBgn0053325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head3 ± 11 of 4 0.20Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland8 ± 10 of 4 0.60None
Crop2 ± 00 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut5 ± 12 of 4 0.40Down
Heart3 ± 11 of 4 0.22Down
Fat body6 ± 31 of 4 0.46None
Ovary1 ± 00 of 4 0.10Down
Testis5 ± 00 of 4 0.30None
Male accessory glands1498 ± 1224 of 4101.60Up
Virgin spermatheca4 ± 10 of 4 0.31Down
Mated spermatheca3 ± 00 of 4 0.22Down
Adult carcass6 ± 30 of 4 0.40None
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland5 ± 00 of 4 0.35Down
Larval midgut0 ± 00 of 4 0.05Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut3 ± 12 of 4 0.21Down
Larval fat body9 ± 10 of 4 0.60None
Larval trachea3 ± 10 of 4 0.22Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly14 ± 34 of 4

Looking for FBgn0053325. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime