FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053333 through 18771 annotations produced 1 hits

(CG33333):

Annotation Number : CG33333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053333
Gbrowse : chr3R:13243205-13243652 (+) // 100.0 //
Probeset : 1632289_at
Accessions : protein= NP_996225;, nucleotide= NM_206503;
FlyMine data for FBgn0053333.
VDRC has 2 RNAi stocks for FBgn0053333 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	1 of 4	0.30	Down
Head	7 ± 1	2 of 4	0.40	Down
Eye	7 ± 1	2 of 4	0.44	Down
Thoracicoabdominal ganglion	8 ± 1	2 of 4	0.50	Down
Salivary gland	26 ± 3	2 of 4	1.52	None
Crop	12 ± 1	3 of 4	0.70	Down
Midgut	13 ± 1	2 of 4	0.80	None
Tubule	6 ± 0	0 of 4	0.40	Down
Hindgut	11 ± 1	4 of 4	0.70	Down
Heart	7 ± 1	2 of 4	0.44	Down
Fat body	19 ± 4	4 of 4	1.13	None
Ovary	7 ± 1	0 of 4	0.40	Down
Testis	170 ± 7	4 of 4	9.90	Up
Male accessory glands	26 ± 3	4 of 4	1.50	None
Virgin spermatheca	15 ± 1	4 of 4	0.88	None
Mated spermatheca	16 ± 3	3 of 4	0.93	None
Adult carcass	15 ± 4	2 of 4	0.90	None
Larval CNS	8 ± 2	4 of 4	0.51	Down
Larval Salivary gland	13 ± 3	3 of 4	0.79	None
Larval midgut	13 ± 2	2 of 4	0.80	None
Larval tubule	5 ± 0	0 of 4	0.30	Down
Larval hindgut	11 ± 1	3 of 4	0.68	Down
Larval fat body	137 ± 110	3 of 4	8.00	None
Larval trachea	12 ± 4	3 of 4	0.75	None
Larval carcass	648 ± 337	4 of 4	37.76	None
S2 cells (growing)	8 ± 1	0 of 4	0.47	Down
Whole fly	17 ± 1	4 of 4

Looking for FBgn0053333. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720