Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053340 through 18771 annotations produced 1 hits


(CG33340):

Annotation Number : CG13612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053340
Gbrowse : chr3R:20187568-20190015 (+) // 100.0 //
Probeset : 1637128_a_at
Accessions : protein= NP_996281;, nucleotide= NM_206558;
FlyMine data for FBgn0053340.
VDRC has 2 RNAi stocks for FBgn0053340 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head7 ± 02 of 4 0.00Down
Eye5 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion11 ± 11 of 4 0.00Down
Salivary gland17 ± 10 of 4 0.01Down
Crop6 ± 10 of 4 0.00Down
Midgut8 ± 40 of 4 0.00Down
Tubule17 ± 41 of 4 0.00Down
Hindgut39 ± 54 of 4 0.00Down
Heart5 ± 10 of 4 0.00Down
Fat body6 ± 41 of 4 0.01Down
Ovary6 ± 10 of 4 0.00Down
Testis3967 ± 2884 of 4 3.20Up
Male accessory glands17 ± 31 of 4 0.00Down
Virgin spermatheca8 ± 22 of 4 0.01Down
Mated spermatheca18 ± 72 of 4 0.01Down
Adult carcass46 ± 173 of 4 0.00Down
Larval CNS9 ± 22 of 4 0.01Down
Larval Salivary gland8 ± 10 of 4 0.01Down
Larval midgut16 ± 40 of 4 0.01Down
Larval tubule8 ± 20 of 4 0.00Down
Larval hindgut12 ± 01 of 4 0.01Down
Larval fat body829 ± 4334 of 4 0.70None
Larval trachea33 ± 482 of 4 0.03Down
Larval carcass13 ± 11 of 4 0.01Down
S2 cells (growing)7 ± 10 of 4 0.01Down
Whole fly1245 ± 814 of 4

Looking for FBgn0053340. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime