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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053349 through 18771 annotations produced 1 hits



pickpocket 25 (ppk25):

Annotation Number : CG15242
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053349
Gbrowse : chr2R:2837009-2839663 (+) // 100.0 //
Probeset : 1629024_at
Accessions : protein= NP_995766;, nucleotide= NM_206044;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0053349.
TRiP has 1 RNAi stocks for FBgn0053349 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 20 of 4 1.90None
Head1 10 of 4 0.40None
Eye2 00 of 4 0.66None
Thoracicoabdominal ganglion1 00 of 4 0.30None
Salivary gland5 30 of 4 1.37None
Crop1 10 of 4 0.40None
Midgut0 00 of 4 0.20None
Tubule2 00 of 4 0.50Down
Hindgut0 00 of 4 0.10None
Heart3 10 of 4 0.92None
Fat body0 00 of 4 0.16None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.27None
Mated spermatheca2 00 of 4 0.69None
Adult carcass3 20 of 4 0.80None
Larval CNS1 10 of 4 0.38None
Larval Salivary gland1 00 of 4 0.25None
Larval midgut0 00 of 4 0.18None
Larval tubule0 00 of 4 0.20None
Larval hindgut0 00 of 4 0.10None
Larval fat body2 10 of 4 0.60None
Larval trachea0 00 of 4 0.07None
Larval carcass1 10 of 4 0.45None
S2 cells (growing)1 00 of 4 0.27None
Whole fly4 10 of 4

Looking for FBgn0053349. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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