FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053454 through 18771 annotations produced 1 hits

(CG33454):

Annotation Number : CG33454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053454
Gbrowse : chr2R:15138531-15139171 (-) // 100.0 //
Probeset : 1641013_at
Accessions : protein= NP_995887;, nucleotide= NM_206165;
FlyMine data for FBgn0053454.
VDRC has 1 RNAi stocks for FBgn0053454 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	1.10	None
Head	4 ± 0	0 of 4	1.30	None
Eye	1 ± 0	0 of 4	0.40	None
Thoracicoabdominal ganglion	4 ± 0	0 of 4	1.20	None
Salivary gland	17 ± 3	0 of 4	4.77	Up
Crop	5 ± 0	0 of 4	1.40	None
Midgut	3 ± 1	0 of 4	0.90	None
Tubule	3 ± 1	0 of 4	0.90	None
Hindgut	3 ± 1	1 of 4	1.00	None
Heart	3 ± 1	0 of 4	0.92	None
Fat body	6 ± 2	1 of 4	1.77	None
Ovary	3 ± 1	0 of 4	0.80	None
Testis	2 ± 1	1 of 4	0.70	None
Male accessory glands	4 ± 0	0 of 4	1.30	None
Virgin spermatheca	5 ± 1	0 of 4	1.51	None
Mated spermatheca	4 ± 1	1 of 4	1.22	None
Adult carcass	6 ± 3	0 of 4	1.70	None
Larval CNS	2 ± 2	0 of 4	0.81	None
Larval Salivary gland	4 ± 2	1 of 4	1.34	None
Larval midgut	3 ± 1	1 of 4	0.99	None
Larval tubule	6 ± 0	0 of 4	1.80	None
Larval hindgut	3 ± 0	0 of 4	0.99	None
Larval fat body	9 ± 3	0 of 4	2.70	None
Larval trachea	2 ± 2	0 of 4	0.79	None
Larval carcass	6 ± 1	2 of 4	1.80	None
S2 cells (growing)	2 ± 0	0 of 4	0.73	None
Whole fly	3 ± 1	0 of 4

Looking for FBgn0053454. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720