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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053458 through 18771 annotations produced 1 hits


Annotation Number : CG33458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053458
Gbrowse : chr2R:12374501-12375256 (+) // 100.0 //
Probeset : 1625360_at
Accessions : protein= NP_995854;, nucleotide= NM_206132;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0053458.
Homophila reports that CG33458 is a close match (7e-11) to human gene F2 (NP_000497), a gene associated with Dysprothrombinemia (3);Hyperprothrombinemia (3);Hypoprothrombinemia (3).
VDRC has 2 RNAi stocks for FBgn0053458 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 5.10None
Head4 00 of 4 6.50Up
Eye1 00 of 4 1.33None
Thoracicoabdominal ganglion3 10 of 4 5.20None
Salivary gland18 60 of 423.93None
Crop5 10 of 4 6.60None
Midgut3 00 of 4 4.40Up
Tubule7 10 of 4 9.70Up
Hindgut4 10 of 4 5.40None
Heart10 14 of 414.37Up
Fat body20 73 of 427.50Up
Ovary1 00 of 4 2.00None
Testis2 00 of 4 3.80None
Male accessory glands4 10 of 4 6.50None
Virgin spermatheca41 64 of 455.50Up
Mated spermatheca49 143 of 465.50Up
Adult carcass8 10 of 411.50Up
Larval CNS12 53 of 416.47Up
Larval Salivary gland2 10 of 4 3.30None
Larval midgut1 00 of 4 2.50None
Larval tubule7 10 of 410.50Up
Larval hindgut1 00 of 4 2.53None
Larval fat body10 20 of 413.60Up
Larval trachea2 10 of 4 3.17None
Larval carcass4 10 of 4 5.87None
S2 cells (growing)0 00 of 4 1.03None
Whole fly0 00 of 4

Looking for FBgn0053458. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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