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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053468 through 18771 annotations produced 1 hits



(CG33468):

Annotation Number : CG33468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053468
Gbrowse : chr2R:10493878-10494464 (-) // 100.0 //
Probeset : 1635486_at
Accessions : protein= NP_995837;, nucleotide= NM_206115;
FlyMine data for FBgn0053468.
VDRC has 2 RNAi stocks for FBgn0053468 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.60Down
Head12 ± 03 of 4 1.10None
Eye3 ± 21 of 4 0.35None
Thoracicoabdominal ganglion5 ± 00 of 4 0.50Down
Salivary gland6 ± 20 of 4 0.56None
Crop7 ± 10 of 4 0.70None
Midgut56 ± 54 of 4 5.30Up
Tubule5 ± 00 of 4 0.50Down
Hindgut14 ± 31 of 4 1.30None
Heart4 ± 10 of 4 0.41Down
Fat body1 ± 00 of 4 0.15Down
Ovary4 ± 10 of 4 0.40Down
Testis10 ± 00 of 4 1.00None
Male accessory glands13 ± 31 of 4 1.30None
Virgin spermatheca8 ± 20 of 4 0.79None
Mated spermatheca12 ± 00 of 4 1.18None
Adult carcass3 ± 20 of 4 0.30Down
Larval CNS8 ± 00 of 4 0.80None
Larval Salivary gland16 ± 21 of 4 1.54None
Larval midgut11 ± 00 of 4 1.07None
Larval tubule5 ± 10 of 4 0.50None
Larval hindgut5 ± 10 of 4 0.48None
Larval fat body6 ± 20 of 4 0.60None
Larval trachea3 ± 30 of 4 0.34Down
Larval carcass8 ± 20 of 4 0.76None
S2 cells (growing)29 ± 34 of 4 2.72Up
Whole fly10 ± 10 of 4

Looking for FBgn0053468. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime