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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053476 through 18771 annotations produced 1 hits



(CG33476):

Annotation Number : CG33476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053476
Gbrowse : chr2R:6297489-6297927 (-) // 100.0 //
Probeset : 1634665_at
Accessions : protein= NP_995798;, nucleotide= NM_206076;
FlyMine data for FBgn0053476.
VDRC has 1 RNAi stocks for FBgn0053476 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.90None
Head0 ± 00 of 4 0.80None
Eye0 ± 00 of 4 0.79None
Thoracicoabdominal ganglion0 ± 00 of 4 0.80None
Salivary gland3 ± 00 of 4 3.91None
Crop1 ± 00 of 4 1.20None
Midgut1 ± 00 of 4 1.70None
Tubule1 ± 00 of 4 1.20None
Hindgut2 ± 10 of 4 2.70None
Heart0 ± 00 of 4 0.85None
Fat body1 ± 00 of 4 1.97None
Ovary2 ± 00 of 4 2.60None
Testis1 ± 00 of 4 1.80None
Male accessory glands4 ± 10 of 4 5.30None
Virgin spermatheca1 ± 00 of 4 1.82None
Mated spermatheca1 ± 00 of 4 1.52None
Adult carcass1 ± 00 of 4 2.00None
Larval CNS0 ± 00 of 4 0.82None
Larval Salivary gland1 ± 00 of 4 1.42None
Larval midgut0 ± 00 of 4 1.03None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut1 ± 10 of 4 2.06None
Larval fat body1 ± 00 of 4 1.70None
Larval trachea0 ± 00 of 4 0.88None
Larval carcass2 ± 00 of 4 3.24None
S2 cells (growing)0 ± 00 of 4 0.94None
Whole fly0 ± 00 of 4

Looking for FBgn0053476. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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