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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053483 through 18771 annotations produced 1 hits


Annotation Number : Stencil:3R:26717160:26715860:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053483
Gbrowse : chr3R:26726494-26727741 (-) // 99.64 //
Probeset : 1636529_at
Accessions : protein= NP_996313;, nucleotide= NM_206590;
FlyMine data for FBgn0053483.
VDRC has 1 RNAi stocks for FBgn0053483 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.10None
Head1 00 of 4 0.50None
Eye2 00 of 4 1.21None
Thoracicoabdominal ganglion2 10 of 4 1.00None
Salivary gland2 00 of 4 1.07None
Crop4 10 of 4 1.90None
Midgut9 10 of 4 4.10Up
Tubule4 00 of 4 1.90Up
Hindgut1 00 of 4 0.60None
Heart2 10 of 4 1.17None
Fat body8 41 of 4 3.59None
Ovary1 01 of 4 0.80None
Testis5 10 of 4 2.20None
Male accessory glands6 10 of 4 2.60None
Virgin spermatheca2 00 of 4 1.15None
Mated spermatheca2 00 of 4 0.83None
Adult carcass1 00 of 4 0.60None
Larval CNS2 00 of 4 1.00None
Larval Salivary gland4 10 of 4 1.76None
Larval midgut2 10 of 4 1.16None
Larval tubule4 01 of 4 1.90None
Larval hindgut3 10 of 4 1.28None
Larval fat body4 10 of 4 1.80None
Larval trachea0 00 of 4 0.29None
Larval carcass2 00 of 4 1.16None
S2 cells (growing)2 00 of 4 0.90None
Whole fly2 00 of 4

Looking for FBgn0053483. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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