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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053506 through 18771 annotations produced 1 hits



(CG33506):

Annotation Number : CG10220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053506
Gbrowse : chr2R:10745017-10748250 (-) // 100.0 //
Probeset : 1632763_at
Accessions : protein= NP_001014528;, nucleotide= NM_001014528;
FlyMine data for FBgn0053506.
VDRC has 3 RNAi stocks for FBgn0053506 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 ± 24 of 4 0.80Down
Head89 ± 34 of 4 0.60Down
Eye76 ± 34 of 4 0.51Down
Thoracicoabdominal ganglion126 ± 44 of 4 0.80Down
Salivary gland74 ± 64 of 4 0.49Down
Crop138 ± 64 of 4 0.90None
Midgut106 ± 64 of 4 0.70Down
Tubule203 ± 84 of 4 1.40Up
Hindgut131 ± 44 of 4 0.90None
Heart129 ± 104 of 4 0.86None
Fat body111 ± 184 of 4 0.74Down
Ovary267 ± 34 of 4 1.80Up
Testis80 ± 84 of 4 0.50Down
Male accessory glands53 ± 34 of 4 0.40Down
Virgin spermatheca117 ± 74 of 4 0.78Down
Mated spermatheca119 ± 94 of 4 0.79Down
Adult carcass97 ± 44 of 4 0.70Down
Larval CNS163 ± 54 of 4 1.09None
Larval Salivary gland145 ± 84 of 4 0.97None
Larval midgut107 ± 104 of 4 0.72Down
Larval tubule102 ± 54 of 4 0.70Down
Larval hindgut153 ± 154 of 4 1.02None
Larval fat body145 ± 54 of 4 1.00None
Larval trachea165 ± 144 of 4 1.10None
Larval carcass134 ± 94 of 4 0.90None
S2 cells (growing)113 ± 14 of 4 0.76Down
Whole fly150 ± 64 of 4

Looking for FBgn0053506. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime