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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053510 through 18771 annotations produced 1 hits



(CG33510):

Annotation Number : CG14398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053510
Gbrowse : chr2L:21081126-21088730 (-) // 100.0 //
Probeset : 1637958_at
Accessions : protein= NP_001014493;, nucleotide= NM_001014493;
FlyMine data for FBgn0053510.
VDRC has 1 RNAi stocks for FBgn0053510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.40Down
Salivary gland7 ± 40 of 4 0.71None
Crop2 ± 00 of 4 0.20Down
Midgut76 ± 34 of 4 7.40Up
Tubule52 ± 164 of 4 5.10Up
Hindgut4 ± 10 of 4 0.40Down
Heart4 ± 00 of 4 0.39Down
Fat body9 ± 30 of 4 0.87None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca8 ± 12 of 4 0.81None
Mated spermatheca5 ± 10 of 4 0.49Down
Adult carcass5 ± 20 of 4 0.50None
Larval CNS1 ± 00 of 4 0.19Down
Larval Salivary gland3 ± 20 of 4 0.38None
Larval midgut73 ± 64 of 4 7.16Up
Larval tubule13 ± 14 of 4 1.30Up
Larval hindgut10 ± 02 of 4 1.03None
Larval fat body5 ± 31 of 4 0.50None
Larval trachea2 ± 00 of 4 0.25Down
Larval carcass1 ± 00 of 4 0.17Down
S2 cells (growing)2 ± 00 of 4 0.28Down
Whole fly10 ± 04 of 4

Looking for FBgn0053510. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime