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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053512 through 18771 annotations produced 2 hits



dpr4 (dpr4):

Annotation Number : CG14707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053512
Gbrowse : chr3R:7364783-7364969 (-) // 100.0 //
Probeset : 1627917_at
Accessions : protein= NP_001014616; /// NP_001163589;, nucleotide= NM_001014616; /// NM_001170118;
FlyMine data for FBgn0053512.
VDRC has 4 RNAi stocks for FBgn0053512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 14 of 413.20Up
Head18 ± 50 of 4 3.10None
Eye8 ± 20 of 4 1.42None
Thoracicoabdominal ganglion45 ± 92 of 4 7.60Up
Salivary gland15 ± 30 of 4 2.53None
Crop6 ± 20 of 4 1.10None
Midgut7 ± 20 of 4 1.30None
Tubule4 ± 00 of 4 0.70Down
Hindgut7 ± 20 of 4 1.20None
Heart5 ± 10 of 4 0.91None
Fat body4 ± 20 of 4 0.69None
Ovary5 ± 20 of 4 0.90None
Testis1 ± 00 of 4 0.30None
Male accessory glands8 ± 20 of 4 1.30None
Virgin spermatheca6 ± 20 of 4 1.12None
Mated spermatheca11 ± 20 of 4 1.93None
Adult carcass13 ± 50 of 4 2.30None
Larval CNS10 ± 20 of 4 1.68None
Larval Salivary gland4 ± 00 of 4 0.70None
Larval midgut3 ± 00 of 4 0.61None
Larval tubule5 ± 20 of 4 0.90None
Larval hindgut9 ± 20 of 4 1.61None
Larval fat body4 ± 10 of 4 0.70None
Larval trachea10 ± 20 of 4 1.76None
Larval carcass12 ± 30 of 4 2.00None
S2 cells (growing)4 ± 10 of 4 0.67None
Whole fly6 ± 20 of 4



dpr4 (dpr4):

Annotation Number : CG12593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053512
Gbrowse : chr3R:7360221-7362617 (-) // 100.0 //
Probeset : 1624295_at
Accessions : protein= NP_001014616; /// NP_001163589;, nucleotide= NM_001014616; /// NM_001170118;
FlyMine data for FBgn0053512.
VDRC has 4 RNAi stocks for FBgn0053512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 34 of 434.40Up
Head21 ± 24 of 4 4.60Up
Eye9 ± 10 of 4 2.13None
Thoracicoabdominal ganglion83 ± 84 of 418.00Up
Salivary gland3 ± 00 of 4 0.64None
Crop1 ± 00 of 4 0.30None
Midgut2 ± 00 of 4 0.50None
Tubule4 ± 10 of 4 0.90None
Hindgut1 ± 00 of 4 0.20None
Heart0 ± 00 of 4 0.21None
Fat body7 ± 60 of 4 1.66None
Ovary1 ± 00 of 4 0.20None
Testis36 ± 54 of 4 7.80Up
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca3 ± 10 of 4 0.85None
Mated spermatheca7 ± 10 of 4 1.58None
Adult carcass2 ± 00 of 4 0.40None
Larval CNS34 ± 74 of 4 7.46Up
Larval Salivary gland2 ± 10 of 4 0.59None
Larval midgut1 ± 00 of 4 0.40None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut2 ± 00 of 4 0.55None
Larval fat body7 ± 20 of 4 1.60None
Larval trachea3 ± 10 of 4 0.65None
Larval carcass4 ± 10 of 4 0.89None
S2 cells (growing)0 ± 00 of 4 0.21None
Whole fly4 ± 20 of 4

Looking for FBgn0053512. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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