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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053514 through 18771 annotations produced 2 hits



(CG33514):

Annotation Number : CG15018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053514
Gbrowse : chr3L:4365920-4366490 (+) // 100.0 //
Probeset : 1637346_at
Accessions : protein= NP_001014558;, nucleotide= NM_001014558;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0053514.
BDGP gene expression has embryonic in situ data for CG33514: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0053514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.10Down
Head8 ± 12 of 4 0.10Down
Eye3 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion7 ± 22 of 4 0.10Down
Salivary gland12 ± 11 of 4 0.18Down
Crop8 ± 01 of 4 0.10Down
Midgut1155 ± 264 of 417.40Up
Tubule23 ± 83 of 4 0.40Down
Hindgut394 ± 214 of 4 5.90Up
Heart4 ± 11 of 4 0.07Down
Fat body7 ± 22 of 4 0.12Down
Ovary5 ± 12 of 4 0.10Down
Testis6 ± 11 of 4 0.10Down
Male accessory glands6 ± 21 of 4 0.10Down
Virgin spermatheca8 ± 12 of 4 0.12Down
Mated spermatheca8 ± 12 of 4 0.12Down
Adult carcass10 ± 11 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland6 ± 20 of 4 0.09Down
Larval midgut730 ± 534 of 411.02Up
Larval tubule18 ± 74 of 4 0.30Down
Larval hindgut257 ± 254 of 4 3.89Up
Larval fat body17 ± 22 of 4 0.30Down
Larval trachea3 ± 20 of 4 0.06Down
Larval carcass4 ± 11 of 4 0.07Down
S2 cells (growing)7 ± 04 of 4 0.11Down
Whole fly66 ± 44 of 4



(CG33514):

Annotation Number : CG15017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053514
Gbrowse : chr3L:4365495-4365804 (+) // 100.0 //
Probeset : 1640244_at
Accessions : protein= NP_001014558;, nucleotide= NM_001014558;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0053514.
BDGP gene expression has embryonic in situ data for CG33514: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0053514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.03Down
Crop1 ± 00 of 4 0.00Down
Midgut709 ± 284 of 417.70Up
Tubule2 ± 10 of 4 0.10Down
Hindgut312 ± 154 of 4 7.80Up
Heart1 ± 00 of 4 0.03Down
Fat body0 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.01Down
Mated spermatheca0 ± 00 of 4 0.01Down
Adult carcass0 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut388 ± 264 of 4 9.66Up
Larval tubule6 ± 40 of 4 0.20Down
Larval hindgut172 ± 124 of 4 4.29Up
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.04Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly40 ± 93 of 4

Looking for FBgn0053514. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime